BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1086.p
         (329 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981461|ref|YP_001354518.1| transcriptional regulator [Jant...    77   2e-15

>gi|152981461|ref|YP_001354518.1| transcriptional regulator
           [Janthinobacterium sp. Marseille]
          Length = 841

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 145/330 (43%), Gaps = 23/330 (6%)

Query: 3   KQISTTELPTSQRFRFWSEVVDNYFVKLDCRIEPVPTEKAKDGLVAQLNHAQLGSLDLLE 62
            + ST   P   R   W + +    + L C + P  +E++     A ++ +   S+   +
Sbjct: 21  NRFSTDAFPGELRAGAWLQTLAR--IGLTCDLPP--SERSPLHGCASVSISSHASV-FAK 75

Query: 63  VQAHPQTVVRNP--LRGQDEDYFLFHLQTQGDCQIIQDDRKIVIKPGEMAMYDTRRPYQV 120
           +   PQ ++ +P    G+  D  L     +G  Q+        +  G++ + + ++ +++
Sbjct: 76  LHGSPQ-ILHSPQDAVGKRNDVVLILALLEGQGQLSVGPESARMNAGDIFLVNPQQDWRL 134

Query: 121 SLREEF-----RMRTMRIPVELLRLQLPHPERLVASPVLPQGFVGRFLGNTINSLFDEHQ 175
            L+  F      ++       L+R       R+V +     G    FL  +I   FD   
Sbjct: 135 ELQTAFTAILIELKEAGFLARLMRTGASDLNRVVTNHG-AGGISADFL-YSIGEHFDGLS 192

Query: 176 DIPQDQGSALAKATVEMVALGLQSVLPADEALS-----SSRMCQYHLERIKHCISCHLGN 230
             P+D G   A  T  ++A G+     A+EA       S+ +   HL R+   I   L +
Sbjct: 193 --PEDLGQMEASLTSLLIA-GMARNGDAEEASDPDAEHSTSVQLGHLRRVCRSIENRLTD 249

Query: 231 AELNVEWLALRLRMSVSSIHRAFECESQTVTEYIWNKRLDACKEALANHKLQRRSISDIA 290
            E+++  +A    +S   I + F     T  EY+  +RLD C+  LAN  L+  +I ++ 
Sbjct: 250 PEVSISEIARIENLSARYIQKLFAGGDTTFGEYVKKRRLDRCRNDLANSALKHLTICELC 309

Query: 291 YDWGFSSNAHFSRAFKRHTGMSPRDFKAGA 320
           + WGF+  A+FSRAF    G+SP+ ++A A
Sbjct: 310 FRWGFNDAANFSRAFNLEFGISPKAYRASA 339


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 711,549
Number of extensions: 27343
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 245
Effective length of database: 910,473
Effective search space: 223065885
Effective search space used: 223065885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)