BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1078.p
         (150 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980910|ref|YP_001353544.1| major facilitator transporter [...   198   2e-52

>gi|152980910|ref|YP_001353544.1| major facilitator transporter
           [Janthinobacterium sp. Marseille]
          Length = 436

 Score =  198 bits (503), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 92/141 (65%), Positives = 110/141 (78%)

Query: 4   STAALGTVPETTGIYRKITFKILPFLLICYFFAYLDRVNVAFAKLQMAQHLQFSDAVYGL 63
           ST A         IY K+T ++LPFL +CY  AYLDRVNV FAKL M   LQFS+ +YGL
Sbjct: 7   STTASDRTKLEDSIYAKVTLRLLPFLFLCYVAAYLDRVNVGFAKLSMLNDLQFSETIYGL 66

Query: 64  GAGIFFIGYFIFEVPSNLIMERVGAKRWISRIMVTWGLLSAGMAFVTTAEQFYVMRFLLG 123
           GAGIFFIGYF+FEVPSN+IM +VGA+RWI+RIM+TW +LSA   FVTT   FYV+RFLLG
Sbjct: 67  GAGIFFIGYFLFEVPSNIIMHKVGARRWIARIMITWSILSAATMFVTTPTMFYVIRFLLG 126

Query: 124 AAEAGFFPGVLLYLSYWFPPA 144
            AEAGFFPG++LYL+YWFP +
Sbjct: 127 VAEAGFFPGIVLYLTYWFPTS 147


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.332    0.145    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 296,912
Number of extensions: 9301
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 75
Effective length of database: 943,746
Effective search space: 70780950
Effective search space used: 70780950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 125 (52.8 bits)