BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1077.p (308 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 87 9e-19 gi|152981653|ref|YP_001353379.1| LysR family transcriptional reg... 79 3e-16 gi|152981488|ref|YP_001352078.1| LysR family transcriptional reg... 74 2e-14 gi|152982492|ref|YP_001352911.1| LysR family transcriptional reg... 69 4e-13 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 64 1e-11 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 87.4 bits (215), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 70/295 (23%), Positives = 138/295 (46%), Gaps = 10/295 (3%) Query: 10 DLSQLRAFIAIARIGSLGRAAESLHLTQSGLTRILQRLEEQVSAPLFERRASGMVLTAYG 69 +L LR F+A A+ S RA+ESLH+TQ L+ ++++E+++ LF+R + LT G Sbjct: 2 ELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTAG 61 Query: 70 QAFEPYASLIVGEADNAIKELAALRGLEKGLIKVGAVGSALAGIVPEAVSCLLSQWPGLQ 129 + F+ YA + E D + L L L+ G + G + S +P ++ +PG++ Sbjct: 62 ELFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGIK 121 Query: 130 VRVEEGLAQELAVWLAKGEIDLAVTFSMPTTEDISLVVESRPQEGCKVVASLDHPLRAKG 189 + V + E+ L G++ V ++ +TE I+ VE +V HPL Sbjct: 122 ITVLRLRSGEIEERLLDGDLHFGVAYAPSSTEQIN--VEPLFTVPLALVVGDHHPLVGSA 179 Query: 190 NLKKEDLLTAKWVMPPRKLGPREDWQQWFLDSNLEAPPVTVETRAVDAMRSMVVQCGFLS 249 + +L + VM + R+ L + + P + +E A++ + + V + Sbjct: 180 GITLNELNEHELVMLSDEYNSRKMMDAILLANGI-TPRIVMEMNAIEPILATVRHSSLAT 238 Query: 250 WLP-QLLIQSPAITSSLISPLVVESETYMRRFAVYRRRHGVLSSSTAKLLEELKK 303 L L+ + P + ++P V + ++ RR+ LS++ L++ +++ Sbjct: 239 ILSANLVDEMPGLHQVPLTPTVTHT------VGLFTRRNSHLSAAARALVDTIRQ 287 >gi|152981653|ref|YP_001353379.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 285 Score = 79.0 bits (193), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 94/171 (54%), Gaps = 6/171 (3%) Query: 14 LRAFIAIARIGSLGRAAESLHLTQSGLTRILQRLEEQVSAPLFERRASGMVLTAYGQAFE 73 LR+F+A+ GS RAA+S+HLTQS +++ ++RLEEQ L R + T G++ Sbjct: 7 LRSFVAVVDTGSFTRAADSVHLTQSTVSQQIRRLEEQFDCDLLNRSGRYVATTPEGESLL 66 Query: 74 PYASLIVGEADNAIKELAALRGLEKGLIKVGAVGSALAGIVPEAVSCLLSQWPGLQVRVE 133 YA I+ D A++++ + +E+G I++G A + ++ +PG+++ + Sbjct: 67 GYARRILQLMDEAVEQVT--QSVEQGEIQLGVPEDFAAHALTPVLAAFAGNYPGIRLEIT 124 Query: 134 EGLAQELAVWLAKGEIDLAVTFSMPTTEDISLVVESRPQEGCKVVASLDHP 184 GL+ +L +G++DLA+ + +D + + S P+ C V SL+ P Sbjct: 125 SGLSHDLYRMFQQGKLDLAL---VKQRKDSAPGIASWPEPLCW-VDSLNRP 171 >gi|152981488|ref|YP_001352078.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 326 Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 109/245 (44%), Gaps = 12/245 (4%) Query: 11 LSQLRAFIAIARIGSLGRAAESLHLTQSGLTRILQRLEEQVSAPLFERRASGMVLTAYGQ 70 L QL+ F +AR S RAAE LHLTQ ++ +++LEE LFE+ + LT G Sbjct: 6 LRQLKVFETVARHLSFSRAAEELHLTQPAVSTQVKKLEEHAGLALFEQLGKKIYLTPGGS 65 Query: 71 AFEPYASLIVGEADNAIKELAALRGLEKGLIKVGAVGSALAGIVPEAVSCLLSQWPG--- 127 Y+ I+ + A + +G+ G + V AV SA P + G Sbjct: 66 ELLHYSRTIIQQFQEAEDAMTQFKGITGGKLNV-AVISAGDYFFPRLLVEFARSHQGVTL 124 Query: 128 -LQVRVEEGLAQELAVWLAKGEIDLAVTFSMPTTEDISLVVESRPQEGCKVVASLDHPLR 186 L V EGL ++ L D+A+ PT D+ + E+ +VA+ DHPL Sbjct: 125 NLSVHNREGLLNQMTSNLT----DIAIMVRPPT--DMDTINEAFAPHPYVIVAAPDHPLV 178 Query: 187 AKGNLKKEDLLTAKWVMPPRKLGPREDWQQWFLDSNLEAPPVTVETRAVDAMRSMVVQCG 246 ++ N+ L+ +V+ + + F D + V +E R+ + ++ V+ Sbjct: 179 SQKNIPMSRLMQEPFVVREKGSDTWHSMEDGFGDR-INDINVAMEIRSTETIKQAVIAGM 237 Query: 247 FLSWL 251 +S+L Sbjct: 238 GVSFL 242 >gi|152982492|ref|YP_001352911.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 68.9 bits (167), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 97/197 (49%), Gaps = 4/197 (2%) Query: 11 LSQLRAFIAIARIGSLGRAAESLHLTQSGLTRILQRLEEQVSAPLFERRASGMVLTAYGQ 70 L QLRAF+ +A G AAE L ++QS L+ +++ LE + LF+R + LT G Sbjct: 5 LRQLRAFVTVAETGKFTLAAELLGVSQSSLSLLVRDLENLLGLRLFDRHTRRLELTDAGH 64 Query: 71 AFEPYASLIVGEADNAIKELAALRGLEKGLIKVGAVGSALAGIVPEAVSCLLSQWPGLQV 130 P A + + + ++ L L+KG + + A A ++P+ + ++PG++V Sbjct: 65 DLLPVAQKTLMDLLSVVENSRDLLALKKGRVTIAAGSLHAATVIPDLLKSFNRRYPGIRV 124 Query: 131 RVEEGLAQELAVWLAKGEIDLAVTFSMPTTEDISLVVESRPQEGCKVVASLDHPLRAKGN 190 VE+ +++ + G +D+ + M D S++ + ++ V+ +H L K Sbjct: 125 IVEDVAERQVRELIVAGTVDVGI--GMTLDGDNSMLAQVIGRDKYAVLMHKEHQLMRKKT 182 Query: 191 LKKEDLLTAKWVM--PP 205 + +D+ + ++ PP Sbjct: 183 ITWQDIAATQPILLKPP 199 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 63.9 bits (154), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 3/203 (1%) Query: 10 DLSQLRAFIAIARIGSLGRAAESLHLTQSGLTRILQRLEEQVSAPLFERRASGMVLTAYG 69 DL LR F+ +A G L +AA+ + + Q L++ ++ LE+++ LF R GM LT G Sbjct: 5 DLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTESG 64 Query: 70 QAFEPYASLIVGEADNAIKELAALRGLEKGLIKVGAVGS-ALAGIVPEAVSCLLSQWPGL 128 QA A LI+ + + I+ + + E G + VG S AL +P + + PG+ Sbjct: 65 QALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKSPGV 124 Query: 129 QVRVEEGLAQELAVWLAKGEIDLAVTFSMPTTEDISLVVESRPQEGCKVVASLDHPL-RA 187 + VEE EL L +D+A S P L +E+ E V + H L + Sbjct: 125 IMAVEESNTNELVEDLRHNRLDVAFIRS-PIGSAAGLKMETMLVEEMIVALPITHRLAQR 183 Query: 188 KGNLKKEDLLTAKWVMPPRKLGP 210 + +L L +++ R GP Sbjct: 184 RKSLPLTALAEDDFILNRRPSGP 206 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 689,423 Number of extensions: 27057 Number of successful extensions: 151 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 152 Number of HSP's successfully gapped: 19 Length of query: 308 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 225 Effective length of database: 914,170 Effective search space: 205688250 Effective search space used: 205688250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)