BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1076.p (486 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrog... 241 9e-65 gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde deh... 164 9e-42 gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogen... 130 2e-31 >gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrogenase (NADP+) [Janthinobacterium sp. Marseille] Length = 490 Score = 241 bits (614), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 166/473 (35%), Positives = 252/473 (53%), Gaps = 16/473 (3%) Query: 14 YSNG-WQTGTEKPHSVVEPATGELLGTVGVGSSADIARAAEIAAAAQRAWAETTFTVRAE 72 Y NG W TG + V PA G + V + + +A + A AA AWA T RA Sbjct: 20 YINGAWVTG-KASFDVNNPADGSKITDVPNLGAQETEQAIQAAHAAFPAWAAKTGKERAG 78 Query: 73 ILRKAASLLRQRAEEFTYWNIRECGS--IRPKADFELDATYEQLQMAAGMLLQPDGLMYP 130 I+R L+ A++ E G I + + A++ ++ A + G + Sbjct: 79 IMRIWFDLIIANADDLAALMTAEQGKPLIESRGEVIYGASF--IEWFAEEAKRVSGDVMA 136 Query: 131 STMPGRLNFTRHVPIGAVGVISPWNFPLLLGMRSVAPALAMGNSVILKPDVQSAITGGAL 190 ST + T PIG I+PWNFP+ + R VAPA+A G ++++KP Q+ ++ A Sbjct: 137 STWSDKRTVTIKQPIGVCASITPWNFPIAMITRKVAPAIAAGCTIVIKPAEQTPLSALA- 195 Query: 191 IAEIFEEAGLPPGVLHVIPG----AAATGDALVRHPKVGMISFTGSTAVGRQIGAICGQT 246 IAE+ AG+PPGV++V+ + A G L P V +SFTGST VGR + C T Sbjct: 196 IAELAHRAGIPPGVINVVTSDSDQSIAVGKVLCSSPIVRHVSFTGSTPVGRILMEQCAPT 255 Query: 247 LKKVSLELGGNNVQIVLEDADLDAAASSGAWGSFLHQGQICMQTGRHLVHKSVAKQYAEK 306 +KK+ LELGG+ IV +DADLDAA + + GQ C+ T R VH+S+ + +K Sbjct: 256 VKKIGLELGGHAPFIVFDDADLDAAVVGALQSKYRNAGQTCVCTNRFYVHESIYDTFVQK 315 Query: 307 LAERAQRLQVGNPFKDQVHLGPLINERQRDRIAGIVKSSVDTGAKVLAGGTYKDL---FF 363 L A +++VGN + V GPLI+ + ++ V +V GAKV+ GG L F+ Sbjct: 316 LGAGAAKIKVGNGVEQGVLQGPLIDAQAVKKVEQHVSDAVSKGAKVITGGKQHALGGYFY 375 Query: 364 QATVLGDVTSDMPVFTEEIFGPVAPITVFEDEDHAVELANSSEYGLAAAIHTKSVARGIA 423 + TVL +++ DM + EE FGPVA + F+ ED AV AN +++GLA+ +++ + R Sbjct: 376 EPTVLSNISPDMLIMHEETFGPVAAVIKFKTEDEAVAAANDTDFGLASYFYSRDIGRVWR 435 Query: 424 LASRVRAGMVHINDQTVNNEFHVPFGGMGASGNGGRFGGPANFHEFTQTQWVS 476 +A ++ GMV IN ++NE PFGG+ SG GR G E+ + +++ Sbjct: 436 VAEKLEYGMVGINTGLISNEV-APFGGVKQSGL-GREGSKYGIEEYLEIKYLC 486 >gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde dehydrogenase [Janthinobacterium sp. Marseille] Length = 505 Score = 164 bits (416), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 136/443 (30%), Positives = 207/443 (46%), Gaps = 23/443 (5%) Query: 12 KIYSNGWQTGTE--KPHSVVEPATGELLGTVGVGSSADIARAAEIAAAAQRAWAETTFTV 69 K Y NG T T + V PATGE V + S AD+ A AA AWA+T Sbjct: 8 KHYINGRLTETAGGRQQDVFNPATGEASAQVVLASDADVQAVVATAKAAAPAWADTAPLK 67 Query: 70 RAEILRKAASLLRQRAEEFTYWNIRECGSIRPKADFELDATYEQLQMAAGM--LLQPDGL 127 RA IL K L+ + ++ RE G + A E+ E ++ A G+ LL+ Sbjct: 68 RARILFKFKDLIEKHHDDLAAAITREHGKVFSDAKGEVTRGLEVVEFACGVPQLLK---T 124 Query: 128 MYPSTMPGRL-NFTRHVPIGAVGVISPWNFPLLLGMRSVAPALAMGNSVILKPDVQSAIT 186 + + G + N+ P+G I+P+NFP ++ M ALA GN+ ILKP + + Sbjct: 125 QFTDNIGGGIDNWNLRQPLGVTAGITPFNFPFMVPMWMAPVALATGNTFILKPSERDP-S 183 Query: 187 GGALIAEIFEEAGLPPGVLHVIPGAAATGDALVRHPKVGMISFTGSTAVGRQIGAICGQT 246 ++AE+ ++AGLP GV +V+ G D L++HP V +SF GST + I A G Sbjct: 184 PSLMVAELLQQAGLPDGVFNVLQGDKLAVDGLLQHPDVKAVSFVGSTPIAEYIYA-TGAA 242 Query: 247 LKKVSLEL------GGNNVQIVLEDADLDAAASSGAWGSFLHQGQICMQTGRHLVHKSVA 300 K S L G N +V+ DA+L+ A + ++ G+ CM + +A Sbjct: 243 RKGGSYPLRVQALGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAISVAVAVGDIA 302 Query: 301 KQYAEKLAERAQRLQVGNPFKDQVHLGPLINERQRDRIAGIVKSSVDTGAKVL------- 353 + L R + L+V N + +GP+++ + +I G + + V GAK+L Sbjct: 303 DKLVAALIPRVKSLKVKNGMEADAEMGPVVSAAHKAKIEGYIDAGVKAGAKLLVDGRGLK 362 Query: 354 AGGTYKDLFFQATVLGDVTSDMPVFTEEIFGPVAPITVFEDEDHAVELANSSEYGLAAAI 413 G K F + VT +M ++ EEIFGPV + + A+EL N E+G ++ Sbjct: 363 VAGHDKGFFLGGCLFDHVTPEMTIYQEEIFGPVLCVLRVPNFAAALELINRHEFGNGVSL 422 Query: 414 HTKSVARGIALASRVRAGMVHIN 436 T + RV GMV IN Sbjct: 423 FTSDGNTAREFSRRVEVGMVGIN 445 >gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase [Janthinobacterium sp. Marseille] Length = 1242 Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 127/453 (28%), Positives = 196/453 (43%), Gaps = 39/453 (8%) Query: 28 VVEPAT-GELLGTVGVGSSADIARAAEIAAAAQRAWAETTFTVRAEILRKAASLLRQRAE 86 V PA +++GTV +A + A + A + W RA IL +AA L +Q A Sbjct: 602 VRNPANHADVVGTVQQADAAVLELALQHATSGINTWQAKPIAERAAILLQAADLFQQHAT 661 Query: 87 EFTYWNIRECGSIRPKADFELDATYEQLQMAAGMLLQPDGLMYPSTMPGRLNFTRHVPIG 146 E +RE G P A EL + L+ + + D + P+G Sbjct: 662 ELIALLVREAGKTLPNAIGELREAIDFLRYYSAQAIASDA---------------NQPLG 706 Query: 147 AVGVISPWNFPLLLGMRSVAPALAMGNSVILKPDVQSAITGGALIAEIFEEAGLPPGVLH 206 V ISPWNFPL + V+ ALA N V+ KP Q+ + + ++ +AG+P L Sbjct: 707 LVACISPWNFPLSIFTGQVSAALAAANVVLAKPAEQTPLIACRAV-QLLHQAGVPENALL 765 Query: 207 VIPGAAAT-GDALVRHPKVGMISFTGSTAVGRQIGAICGQTL----KKVSL--ELGGNNV 259 +PG+ T G LV P+V + FTGST V + I Q K + L E GG N Sbjct: 766 FLPGSGETIGAQLVTDPRVSAVVFTGSTQVAQSIQRKLVQRSISEGKDIPLIAETGGQNT 825 Query: 260 QIVLEDADLDAAASSGAWGSFLHQGQICMQTGRHLVHKSVAKQYAEKLAERAQRLQVGNP 319 IV A + +F GQ C + +A+Q + L Q L++G P Sbjct: 826 MIVDSSALCEQVVRDVISSAFDSAGQRCSALRVLCLQDDIAEQTLQMLHGAMQELRIGRP 885 Query: 320 FKDQVHLGPLINERQRDRIAGIVKSSVDTGAKV------LAGGTYKDLFFQATVLGDVTS 373 +GP+I+ + + ++ + G +V + G+ F A + ++ + Sbjct: 886 DHLATDVGPVIDAEAQAHLQAYIRQAQAAGKQVRQLPLPVTNGS-----FVAPCIIEI-A 939 Query: 374 DMPVFTEEIFGPVAPITVFEDEDHAVELA--NSSEYGLAAAIHTKSVARGIALASRVRAG 431 D+ E+FGPV + + +D L NS+ +GL IHT+ + + G Sbjct: 940 DINELQREVFGPVLHVLRYRRDDLPQLLMDINSTGFGLTLGIHTRIDETIDYVVRHAQVG 999 Query: 432 MVHINDQTVNNEFHV-PFGGMGASGNGGRFGGP 463 +++N V V PFGG G SG G + GGP Sbjct: 1000 NIYVNRNIVGAVVGVQPFGGEGLSGTGPKAGGP 1032 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.133 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,111,089 Number of extensions: 46282 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 137 Number of HSP's successfully gapped: 3 Length of query: 486 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 399 Effective length of database: 899,382 Effective search space: 358853418 Effective search space used: 358853418 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)