BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1075.p
         (360 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981406|ref|YP_001354765.1| mandelate racemase [Janthinobac...   342   2e-95
gi|152979769|ref|YP_001352747.1| mandelate racemase/muconate lac...    97   2e-21

>gi|152981406|ref|YP_001354765.1| mandelate racemase
           [Janthinobacterium sp. Marseille]
          Length = 365

 Score =  342 bits (877), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 174/360 (48%), Positives = 229/360 (63%), Gaps = 6/360 (1%)

Query: 7   IRSLRVRAVNVPLEYPVKTAVGIVATSPLILIDLETSANVTGRAYVFTYTPTALKATGQM 66
           I  +RVRA+ VPL  P+KTA G V  +P++L+D++T A V G AY+FTYTP  L A  Q+
Sbjct: 6   ITEMRVRALIVPLSQPLKTASGTVHAAPMLLLDVQTDAGVCGHAYIFTYTPLVLGAVKQL 65

Query: 67  VKDLEQILVGQPLAPYELDRLLCARFRLIGTTGLVRMAMAGIDMAAWDALAKLHEVPLVT 126
            +DL  +L GQPL P  L   L +RF LIG  GL+ M +AGIDMA WDA AK  E+PLV 
Sbjct: 66  ARDLTLLLEGQPLDPLGLTNNLRSRFMLIGAYGLLDMVLAGIDMAVWDAHAKFLELPLVR 125

Query: 127 LLGGT------PKKIPAYDSHSMDGIEVGSKRAAEAAERGYQAIKTKIGYQTLEEDLKIV 180
            LGG+         IPAY S  MDG+    K  A A ERG++AIK KIGY TL+ED+ +V
Sbjct: 126 ALGGSVGSGASADGIPAYASFGMDGLADAEKHVAAAVERGFKAIKIKIGYPTLQEDIAVV 185

Query: 181 RTLRSIIGDEVQLMVDYNQGLTIPEAIRRGKALEQENIAWIEEPTLQQDYEGHAAIRQAL 240
           R          +LMVDYNQ L + EA+ R  AL+ E + WIEEPT   D  GHA I  A+
Sbjct: 186 RAAIKATEGVARLMVDYNQSLDVAEAMVRCPALDDEGLLWIEEPTRYDDNCGHAQIAAAI 245

Query: 241 NIPVQMGENWFGPDEMAKAINAGASDFAMPDLMKIGGVTGWLRAAALAEQKGIPLSSHIF 300
             P+Q+GEN +GP ++A+++   ASD+ MPDLMKIGGV+GW++A  +     + +S+H F
Sbjct: 246 KTPLQLGENLWGPRQVAESLRMKASDYMMPDLMKIGGVSGWMQAVGVCAANNVRVSNHFF 305

Query: 301 QEFSAHLLAVSPTCHWIERMDLAGAITEPTLQFKDGQAIVPDMPGAGLSWRESEIAKYLV 360
           QE S HLL V+PT H+IE   +A  I    L  ++G AIV D PG G+ W+E  + +Y V
Sbjct: 306 QEISVHLLRVTPTAHYIEYFQMADPILVDPLLVRNGNAIVRDCPGNGIQWKEEAVERYTV 365


>gi|152979769|ref|YP_001352747.1| mandelate racemase/muconate
           lactonizing enzyme family protein [Janthinobacterium sp.
           Marseille]
          Length = 388

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 162/375 (43%), Gaps = 35/375 (9%)

Query: 7   IRSLRVRAVNVPLEYPVKTAVGIVATSPLILIDLETSANVTGRAYV-FTYTPTALKATGQ 65
           ++ + +R   +P+  P++ A    +   L L+ + T     G+  + + +        G 
Sbjct: 1   MKIVEIREKTLPISSPIRNAYIDFSKMTLSLVAVVTDVIRDGKPVIGYGFNSNGRYGQGM 60

Query: 66  MVKD--LEQILVGQP----------LAPYELDRLLCARFRLIGTTGLVRMAMAGIDMAAW 113
           ++++  + +++   P          L P+++   +    +  G  G   +A+  IDMA W
Sbjct: 61  LMRERFIPRLMEADPASLINDAGDNLDPHKIWNTMFTNEK-PGGHGERSVAIGTIDMAVW 119

Query: 114 DALAKLHEVPLVTLL------GGTPKKIPAY--DSHSMDGIEVGSKRAAEAA--ERGYQA 163
           DA+AK+   PL  LL      G   +KI  Y    +   G + G  +    +  +RGY  
Sbjct: 120 DAVAKIEGKPLFQLLADRYGNGQADRKIFVYAAGGYYYPGQDHGKLKDEMRSYIDRGYTV 179

Query: 164 IKTKIGYQTLEEDLKIVRTLRSIIGDEVQLMVDYNQGLTIPEAIRRGKALEQENIAWIEE 223
           +K KIG  +L+EDL+ + ++ S++GD  +L VD N    +  A++  KAL Q ++ W EE
Sbjct: 180 VKKKIGGASLDEDLRRIDSILSVLGDGQKLAVDANGRFDLDTAVKYAKALSQYDLFWYEE 239

Query: 224 PTLQQDYEGHAAIRQALNIPVQMGENWFGPDEMAKAINAGA----SDFAMPDLMKIGGVT 279
                D+E  A +R   + P+  GEN F   +    I  G      D+   D     G+ 
Sbjct: 240 AGDPLDFELQATLRSYYDKPMATGENLFSMQDARNLIRYGGMRPDRDWLQFDCALSYGLV 299

Query: 280 GWLRAAALAEQKG------IPLSSHIFQEFSAHLLAVSPTCHWIERMDLAGAITEPTLQF 333
            +LR   +  + G      IP   H      A  L +     + +     G   +  ++ 
Sbjct: 300 EYLRTLDMLHEHGWSRKRCIPHGGHQMSLNIAAGLGLGGNESYPDLFQPYGGFPD-GVKV 358

Query: 334 KDGQAIVPDMPGAGL 348
           ++G   +PD+PG G 
Sbjct: 359 QNGYITLPDLPGIGF 373


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 875,087
Number of extensions: 37095
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 360
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 276
Effective length of database: 910,473
Effective search space: 251290548
Effective search space used: 251290548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)