BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1074.p
         (397 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980344|ref|YP_001353278.1| L-lactate dehydrogenase (cytoch...   281   4e-77

>gi|152980344|ref|YP_001353278.1| L-lactate dehydrogenase
           (cytochrome) [Janthinobacterium sp. Marseille]
          Length = 381

 Score =  281 bits (720), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 143/377 (37%), Positives = 225/377 (59%), Gaps = 7/377 (1%)

Query: 1   MAKPVNVADYRELAKKRLPKIVFDYLDGGAEDEFGLERNRREFDNILFRPRRLVDVSKRS 60
           M+   N+ D R LA+KR+P++ +DY D G+  E     N  +F  + FR R  V++  R+
Sbjct: 1   MSVITNIEDLRVLAQKRVPRMFYDYADAGSWTESTYRANSSDFAPMKFRQRVAVNMENRT 60

Query: 61  VATALFGKHIAAPMVIAPTGLNGVFWPHGDIALAQAAARFGIPFALSTASTTTIEDVARA 120
           + T + G+ +  P+ IAPTGL G+    G+I  A+AA +FG+PF LST S  +IED+A  
Sbjct: 61  LKTTMVGQEVHMPVAIAPTGLTGMQHADGEILAARAAEKFGVPFTLSTMSICSIEDIAAN 120

Query: 121 SDGELWFQLYVVH-RKLAELLVKRALQAGYTTLILTTDVGVNGKRERDMRNGFGMPMKYT 179
           +    WFQLYV+  R   E L++RA  A  + L+LT D+ + G+R +D++NG   P K T
Sbjct: 121 TSKPFWFQLYVMKDRPFIERLIERAKVAKCSALVLTLDLQILGQRHKDLKNGLSAPPKLT 180

Query: 180 MKTAIDGILHPRWTWDLLTNGMPQLANF---ASDQVQDTELQAALMSRQMDASFSWSDLK 236
           +   ++ +  PRW   +L        N    ASD V D    ++  S+Q D + SW D++
Sbjct: 181 VANIVNMMTKPRWCMGMLGTKRRSFGNIVGHASD-VSDMSSLSSWTSQQFDLALSWKDVE 239

Query: 237 WLRDMWPHKLLVKGLSREDDVARCASLGIDGVILSNHGGRQLDSAIAPIQALPQ--SSAA 294
           W++  W  KL++KG+   +D     + G D +I+SNHGGRQLD A++ I ALP    +  
Sbjct: 240 WIKRCWGGKLIIKGIMDAEDARLAVASGADAIIVSNHGGRQLDGALSSIAALPSIVEAVG 299

Query: 295 TQLPVLLDSGVRRGSDIVKAVALGADAVLLGRATLYGLAARGQTGVTEVLNLLKSEIDTT 354
            Q+ V +D G+R G D++KA+ALGA    +GR+ LYGL A G+ GVT+ L ++++E+D T
Sbjct: 300 DQIEVHMDGGIRSGQDVIKALALGAKGTYIGRSFLYGLGAMGEEGVTKCLKIIENELDLT 359

Query: 355 LAQIGCADINELSRDFI 371
           +A  G  D+ ++ ++ +
Sbjct: 360 MAFCGLTDVKKVDKNIL 376


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 873,082
Number of extensions: 34257
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 312
Effective length of database: 906,776
Effective search space: 282914112
Effective search space used: 282914112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)