BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1073.p (526 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981070|ref|YP_001352069.1| glyoxylate carboligase [Janthin... 135 6e-33 gi|152980052|ref|YP_001353840.1| acetolactate synthase large sub... 114 2e-26 gi|152980239|ref|YP_001352089.1| putative oxalyl-CoA decarboxyla... 106 4e-24 >gi|152981070|ref|YP_001352069.1| glyoxylate carboligase [Janthinobacterium sp. Marseille] Length = 582 Score = 135 bits (340), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 149/570 (26%), Positives = 241/570 (42%), Gaps = 72/570 (12%) Query: 3 TVHQASYALLREQGMTTFFGNPGSNELPFLKDFPKD--FRYILGLHEGAVVGMADGYAQA 60 T QA+ +++++G+ FG PG+ PF K ++IL H MA+GY +A Sbjct: 5 TAAQAAVWVMQKEGIDQAFGVPGAAINPFYSAMQKQGTIKHILARHVEGATHMAEGYTRA 64 Query: 61 TSKPAFVNLHSAAGTGNAM-GALANAWNSHTPLVVTAGQQVRPMIGVEALLANVDSAMLP 119 S V L ++ G M L +A P++ GQ R + E A VD + Sbjct: 65 KSGNIGVALATSGPGGTDMVTGLYSAIADSIPILCVTGQAPRARLHKEDFQA-VDIESIS 123 Query: 120 RPLVKWSCEPASAQEVPLALSRAIHTARSGAPGPVYVSVPYD----------DWAQPVGP 169 +P+ KWS VP +A H RSG PGPV + +P+D D +P+ P Sbjct: 124 KPVTKWSVMVREPALVPQVFQQAFHIMRSGRPGPVLIDLPFDVQVAEIEFDPDLYEPL-P 182 Query: 170 GIEHLASRSVSSATIPAPLQLESVLSALAKAQNPVLIVGPDVDAAHANRDAVTLAEKLGM 229 + A+R Q+E+ ++ L A+ P+LI G V A+A + AE + + Sbjct: 183 VYKPQATRK----------QIEAAIAMLNAAERPLLISGGGVINANATPLMLEFAELVNV 232 Query: 230 PVWMAPSAPRC-SFPTDHQCFQGLLPAGIATIGRL----MEGHDLVLVVGAPVFRYHQYD 284 PV P+ + P DH G++ G+ T R M D +G R+ Sbjct: 233 PV--VPTLMGWGTVPDDHPLMVGMV--GLQTSHRYGNATMLASDFAFGIGN---RWANRF 285 Query: 285 PG--EFLPNGTKLIQITCDINEATRAPFGD--AIIADIGPTLKALAEGAAKSGRPLPAVK 340 G + K + I + + R FG I +D G LK + E AK + +K Sbjct: 286 TGSIDVFTKDRKFVHIDIEPTQIGRV-FGPDLGITSDAGAALKLMIE-VAKELKAAGKLK 343 Query: 341 KRPEPAPE--------------QPGPLAPERVFDILDAVAPRDAVYVNESTSTTNIMWQR 386 R E P+ P+RV+ ++AV + A Y++ + Q Sbjct: 344 NRDAWLAECQERKRTMLRKTDFDVTPIKPQRVYQEMNAVFGKTARYISNIGLSQIAAGQF 403 Query: 387 LRL-KEQGSYFFAAAGGLGFALPAAVGIQLAHKDRRVIGVIGDGSANYGIQALWTAAQYN 445 L + KE+ AG LG+ +PAA+G++ A ++ + GD + I+ L AQ+N Sbjct: 404 LHVYKERNWINCGQAGPLGWTIPAALGVRAADPTSEIVAITGDYDFQFLIEELAAGAQFN 463 Query: 446 IPTIFVIMKNGTYGALRWFAGVLKVDDVPGLDVP----------GLDFCALAKGYGVKSY 495 +P I V++ N G +R + +D L G+D + +G G K+ Sbjct: 464 LPYIHVLVNNSYLGLIRQAQRMFTMDYCVSLAFDNINSTENASYGVDHVKVTEGLGCKAI 523 Query: 496 RANSSESFTAALKSAL----DTNEPVLIEV 521 R + + ALK A + PV++E+ Sbjct: 524 RVYNPDDIAPALKKAQEWIKEFKVPVVVEI 553 >gi|152980052|ref|YP_001353840.1| acetolactate synthase large subunit [Janthinobacterium sp. Marseille] Length = 583 Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 131/557 (23%), Positives = 226/557 (40%), Gaps = 80/557 (14%) Query: 12 LREQGMTTFFGNPGSNELPFLKD---FPKDFRYILGLHEGAVVGMADGYAQATSKPAFVN 68 L E+G+ FG PG L ++ D F++IL HE A V AD Y+++++K Sbjct: 27 LAEEGVEHVFGYPGGAVL-YIYDAIFNHSKFQHILVRHEQAAVHAADAYSRSSNKIGVCL 85 Query: 69 LHSAAGTGNAMGALANAWNSHTPLVVTAGQQVRPMIGVEALLANVDSAMLPRPLVKWSCE 128 + S G NA+ LA A+ P++V +GQ IG++A D+ + RP VK + Sbjct: 86 VTSGPGVTNAVTGLATAYMDSIPMIVISGQVPSHAIGLDA-FQECDTVGITRPCVKHNFL 144 Query: 129 PASAQEVPLALSRAIHTARSGAPGPVYVSVPYD-DWAQPVGPGIEHLASRSVSSATIPAP 187 +++ + +A A +G PGPV + +P D + V + + RS Sbjct: 145 VKDVKDLAATMKKAFFIATTGRPGPVLIDIPKDITMHKCVFEYPKEVEMRSYKPVDKGHS 204 Query: 188 LQLESVLSALAKAQNPVLIVGPDVDAAHANRDAVTLAEKLGMPV---------WMAPSAP 238 Q+ + L +A+ P++ G V A+A+ + L ++LG P + A S Sbjct: 205 GQIRKAVQLLLQAERPMIYTGGGVILANASEELNRLVDRLGYPCTNTLMGLGAYKASSDK 264 Query: 239 RCSFPTDHQCFQGLLPAGIATIGRLMEGHDLVLVVGAPVFRYHQYDPGEFLPNGTKLIQI 298 P H G A +A M+ D+++ +GA +P F K+I I Sbjct: 265 FVGMPGMH----GTYEANMA-----MQHSDVMIAIGARFDDRVIGNPKHFSATPRKIIHI 315 Query: 299 TCDINEATRAPFGDAIIADIGPTLKALAEGAAKSGRPLPAVKKRPEPAPEQPGPLAPERV 358 DI+ ++ + I +G + L E A+ + A +P +A Sbjct: 316 --DIDPSSISKRVKVDIPIVGNVKEVLVELLAQ-----------LDAADAKPNSVALSAW 362 Query: 359 FDILDAVAPRDAVYVNEST------STTNIMWQRLR-----LKEQGSYFFAAA------- 400 + ++ RD + +ST S +W+ + + G + AA Sbjct: 363 WKQINEWRKRDCLKFTDSTEVIKPQSVIQKVWEVTKGDAFITSDVGQHQMWAAQYYPFNK 422 Query: 401 ----------GGLGFALPAAVGIQLAHKDRRVIGVIGDGSANYGIQALWTAAQYNIPTIF 450 G +G LP A+G+Q A+ D V + G+ S IQ L T QY++ Sbjct: 423 PRRWINSGGLGTMGVGLPYAMGVQKANPDATVACITGEASIQMCIQELATCKQYHLTPKI 482 Query: 451 VIMKNGTYGALRWFAGV--------LKVDDVPGLDVPGLDFCALAKGYGVKSYRANSSES 502 +++ N G +R + + +D +P DF L + YG + + Sbjct: 483 ILLNNRFLGMVRQWQQLEYGSRYSESYMDSLP-------DFNKLVESYGHVGMKIENPAD 535 Query: 503 FTAALKSALDTNEPVLI 519 ALK A D + ++ Sbjct: 536 VDGALKEAFDMKDRLVF 552 >gi|152980239|ref|YP_001352089.1| putative oxalyl-CoA decarboxylase [Janthinobacterium sp. Marseille] Length = 570 Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 122/501 (24%), Positives = 209/501 (41%), Gaps = 58/501 (11%) Query: 56 GYAQA-----TSKPAFVNLHSAAGTGNAMGALANAWNSHTPLVVTAGQQVRPMIGVE-AL 109 GYA + T KP SA G N + ALANA + P+++ +G R ++ ++ Sbjct: 65 GYAASVAGYLTKKPGVCVTVSAPGFLNGLTALANATTNCFPMILISGSSEREIVDLQQGD 124 Query: 110 LANVDSAMLPRPLVKWSCEPASAQEVPLALSRAIHTARSGAPGPVYVSVPYDDWAQPVGP 169 +D + RP K S +++ +A+ RAI TA SG PG VY+ +P ++ + Sbjct: 125 YEEMDQLNIARPHCKASFRINRTEDIGVAVVRAIRTALSGRPGGVYLDIPARLFSTTMSA 184 Query: 170 GIEHLASRSV----SSATIPAPLQLESVLSALAKAQNPVLIVGPDVDAAHANRDAVTLAE 225 E S V + A +PAP + + + A+ P++++G A + D L E Sbjct: 185 E-EGQKSLFVPVDPAPAQLPAPSAVSRAVELIKGAKKPLILLGKGAAYAQCDADIKALIE 243 Query: 226 KLGMPVWMAPSAPRCSFPTDHQCFQGLLPAGIATIGRLMEGHDLVLVVGAPVFRYHQYDP 285 + G+P A T QC A +++ D+V+++GA + + Sbjct: 244 ETGIPFTPMSMAKGLVSDTHPQC-------AAAARSMVLQESDVVILIGARLNWLLAHGK 296 Query: 286 GEFLPNGTKLIQITCDINEA-TRAPFGDAIIADIGPTLKALAEGAAKSGRPLPAVKKRPE 344 G+ K +QI NE + P +I DI + AL G + +P + E Sbjct: 297 GKTWGGAKKFVQIDIQANEIDSNVPIAAPLIGDIESCVNALRAGLKGAAKPTEWMSAIAE 356 Query: 345 PAPEQPGPLAPE--------RVFDILDAVAPR-----DAVYVNESTSTTN----IMWQRL 387 A LA + F+ L A+ D VNE +T + ++ Q L Sbjct: 357 RATGTKAKLATKLSTATPVMNYFNSLGAIRDVLKNYPDITLVNEGANTLDNARMVIDQYL 416 Query: 388 RLKEQGSYFFAAAG-GLGFALPAAVGIQLAHKDRRVIGVIGDGSANYGIQALWTAAQYNI 446 K + + G G+G A+ AAV + V+ + GD + + T +YN+ Sbjct: 417 PRKRVDTGTWGVMGIGMGSAVAAAV-----ETGKPVVAICGDSAFGFSAMEYETITRYNL 471 Query: 447 PTIFVIMKNGTYGALRWFAGVLKVDDV-PGLDV------PGLDFCALAKGYGVKSYRANS 499 P +IM NG G+ + D+ P V P + + G + RA + Sbjct: 472 PVTVIIMNNG---------GIYRGDEANPEHQVSCMIFNPKTKYDQFSVALGGEGVRAET 522 Query: 500 SESFTAALKSALDTNEPVLIE 520 E+ AL+++L + +P +I+ Sbjct: 523 PEALAKALEASLKSGKPTIID 543 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.135 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,334,105 Number of extensions: 60749 Number of successful extensions: 213 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 203 Number of HSP's successfully gapped: 3 Length of query: 526 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 438 Effective length of database: 895,685 Effective search space: 392310030 Effective search space used: 392310030 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)