BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1072.p (297 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982855|ref|YP_001355260.1| LysR family transcriptional reg... 174 4e-45 gi|152982346|ref|YP_001355337.1| LysR family transcriptional reg... 151 4e-38 gi|152982787|ref|YP_001352203.1| LysR family transcriptional reg... 105 5e-24 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 67 1e-12 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 57 2e-09 >gi|152982855|ref|YP_001355260.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 174 bits (442), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 167/293 (56%), Gaps = 3/293 (1%) Query: 2 NIDLNLIRTFVAVYETRSVSAAAKRLNITQPSVSYSLQRLRDLLQDPLFTRTRNGMLPTF 61 ++DLNL+ F A+ + R+V++AA RL ++QP++S +L RLR + DPLF RT GM PT Sbjct: 5 SVDLNLLVAFDAIVKERNVTSAAVRLGVSQPAMSNALARLRIIFNDPLFVRTSQGMQPTP 64 Query: 62 NATQLFATFKGAIDNIQDAISAARQFDPSSSTRRFRIALSDLGESHFLPYLVRELESIAP 121 A QL A + I A+ FDP+++T+ F ++++GE LP L++ ++ AP Sbjct: 65 YAEQLIEPVSRACELITSALQINSVFDPATTTKTFSFYMTEIGEILLLPKLLKHIQVAAP 124 Query: 122 SVGLEVIQIDSEKIGEWLSTSHIDAAVGNLEFVGAQILKRKLFTESYSCVVSTKHPTIGN 181 + + V +I + E ++ ID AVG ++ A +++L+T+ ++C+V HPT+ + Sbjct: 125 NACVRVRRIPEQGAKEAMANGEIDLAVGLFPYLKAGFYQQRLYTDKFACIVRQGHPTVHD 184 Query: 182 SLSLEQYVAAKHVVV-SPFTGHH-LVEDVMSEMGIKPIVALRVPHFTSLLAVVATTDLML 239 SL+ +QYV HV+V S TGH +E ++ ++ + + +F L ++ TD + Sbjct: 185 SLTPQQYVDTPHVIVMSANTGHDAAIEKILLTEHLRRKIVMTSQNFLVLPMIIEQTDAIA 244 Query: 240 TLPSRIAKSFAR-DGSMRSLPPPIPIPSFDVNLYWYPHSEDAMAQQWFCETII 291 T+P R+A+ A ++ L PIP P+ D+ +W+ A +W + ++ Sbjct: 245 TIPFRMAQKIASYSTGIKILESPIPFPNVDIKQHWHERFHYDPANKWMRDLMV 297 >gi|152982346|ref|YP_001355337.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 319 Score = 151 bits (382), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 162/303 (53%), Gaps = 15/303 (4%) Query: 1 MNIDLNLIRTFVAVYETRSVSAAAKRLNITQPSVSYSLQRLRDLLQDPLFTRTRNGMLPT 60 + +DLNL+R F AV ++++ AA L +TQP+VS +L+RLRD L D L RT +G+ PT Sbjct: 4 LTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLGDELVIRTAHGVKPT 63 Query: 61 FNATQLFATFKGAIDNIQDAISAARQFDPSSSTRRFRIALSDLGESHFLPYLVRELESIA 120 A +L+ + A+ +++ A++ FD S + FR+A++D + +LP+LVR +E A Sbjct: 64 SRAEELWPVVRRALSDLEAAVTPD-TFDVSRANTTFRMAMADATAALWLPFLVRAIEKDA 122 Query: 121 PSVGLEVIQIDSEKIGEWLSTSHIDAAVGNLEFVGA-----------QILKRKLFTESYS 169 P + + ++ + + + L ID A+G V A QI +L+T Y Sbjct: 123 PGLNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTGEYV 182 Query: 170 CVVSTKHPTIGNSLSLEQYVAAKHVVVSPFTGH--HLVEDVMSEMGIKPIVALRVPHFTS 227 CV+ HP L+L+ Y AA H++VS F+G L+++ ++ +G + + L V F + Sbjct: 183 CVMRKNHPLAKVELTLDNYCAAHHLLVS-FSGRAKGLMDEALTNLGRERRILLTVNQFFT 241 Query: 228 LLAVVATTDLMLTLPSRIAKSFARDGSMRSLPPPIPIPSFDVNLYWYPHSEDAMAQQWFC 287 VVA++DL+ LP + S ++ + P +P V++ W+ A +W Sbjct: 242 AGRVVASSDLITVLPRHLIASTGMAEALIAKDLPFELPDVHVDMLWHERDARNPAHKWLR 301 Query: 288 ETI 290 E + Sbjct: 302 EQL 304 >gi|152982787|ref|YP_001352203.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 311 Score = 105 bits (261), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 133/293 (45%), Gaps = 9/293 (3%) Query: 2 NIDLNLIRTFVAVYETRSVSAAAKRLNITQPSVSYSLQRLRDLLQDPLFTRTRNGMLPTF 61 ++D++LIR + ++VS A +LN QPS+S SL++LR+L DPL R GM+PT Sbjct: 7 HLDIHLIRILYLLLCEKNVSRVALKLNRPQPSISASLRKLRELTGDPLLVRGARGMVPTQ 66 Query: 62 NATQLFATFKGAIDNIQDAISAARQFDPSSSTRRFRIALSDLGESHFLPYLVRELESIAP 121 + L + K +D + F P R F IA D + F ++ L +P Sbjct: 67 HGESLMKSAKRILDEAEHLFIPKTAFVPQDEARTFHIAAPDYMNTQFFTEVIARLRRESP 126 Query: 122 S--VGLEVIQIDSEKIGEWLSTSHIDAAVGNLEFVGAQILKRKLFTESYSCVVSTK---- 175 + + + D++ + LS +D + N + + + KLF + C++ + Sbjct: 127 KSHIVIHALGPDTDYV-RLLSDGELDLVIANWDEMPEHLHMSKLFDDPIVCLMRSDCAYA 185 Query: 176 HPTIGNSLSLEQYVAAKHVVVSP-FTGHH-LVEDVMSEMGIKPIVALRVPHFTSLLAVVA 233 T +++++E Y++ H S G+H ++ + + ++ + + HF L +V Sbjct: 186 KRTAKDAMTIEDYLSLPHAAPSQILPGYHGTIDTFLEKQNLRRNIVVESAHFRMLPYMVE 245 Query: 234 TTDLMLTLPSRIAKSFARDGSMRSLPPPIPIPSFDVNLYWYPHSEDAMAQQWF 286 TDL+LT + + + S++S PI P W+ A +W Sbjct: 246 KTDLVLTAGQQFTSFYEKTLSLKSYTVPIKFPPLRFYQLWHERVHQATEHKWL 298 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 67.0 bits (162), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/291 (22%), Positives = 134/291 (46%), Gaps = 9/291 (3%) Query: 3 IDLNLIRTFVAVYETRSVSAAAKRLNITQPSVSYSLQRLRDLLQDPLFTRTRNGMLPTFN 62 ++L +R F+A +++S + A++ L+ITQP++S+ ++++ D L LF R ++ Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRV-GRVVKLTT 59 Query: 63 ATQLFATF-KGAIDNIQDAISAARQFDPSSSTRRFRIALSDLGESHFLPYLVRELESIAP 121 A +LF + K A+ + + A + + R LS G H LP ++ + + P Sbjct: 60 AGELFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFH-LPPILADFNKVYP 118 Query: 122 SVGLEVIQIDSEKIGEWLSTSHIDAAVGNLEFVGAQILKRKLFTESYSCVVSTKHPTIGN 181 + + V+++ S +I E L + V QI LFT + VV HP +G+ Sbjct: 119 GIKITVLRLRSGEIEERLLDGDLHFGVAYAPSSTEQINVEPLFTVPLALVVGDHHPLVGS 178 Query: 182 S-LSLEQYVAAKHVVVS-PFTGHHLVEDVMSEMGIKPIVALRVPHFTSLLAVVATTDLML 239 + ++L + + V++S + +++ ++ GI P + + + +LA V + L Sbjct: 179 AGITLNELNEHELVMLSDEYNSRKMMDAILLANGITPRIVMEMNAIEPILATVRHSSLAT 238 Query: 240 TLPSRIAKSFARDGSMRSLPPPIPIPSFDVNLYWYPHSEDAMAQQWFCETI 290 L + + + P P + V L+ +S + A + +TI Sbjct: 239 ILSANLVDEMPGLHQV----PLTPTVTHTVGLFTRRNSHLSAAARALVDTI 285 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 2/147 (1%) Query: 2 NIDLNLIRTFVAVYETRSVSAAAKRLNITQPSVSYSLQRLRDLLQDPLFTRTRNGMLPTF 61 +IDL L+R FV V E ++ AA+R+ I QP +S ++ L L LF R GM T Sbjct: 3 SIDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTE 62 Query: 62 NATQLFATFKGAIDNIQDAISAARQFDPSSSTRRFRIALSDLGESH-FLPYLVRELESIA 120 + L + ++ + I R+ S R + ++ H F+P ++R + Sbjct: 63 SGQALLIDARLILEQVNTTIEGVRRISLGESG-RLAVGFTESAALHPFIPAVIRAFRQKS 121 Query: 121 PSVGLEVIQIDSEKIGEWLSTSHIDAA 147 P V + V + ++ ++ E L + +D A Sbjct: 122 PGVIMAVEESNTNELVEDLRHNRLDVA 148 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 603,587 Number of extensions: 22136 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 7 Length of query: 297 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 214 Effective length of database: 914,170 Effective search space: 195632380 Effective search space used: 195632380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)