BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1070.p (250 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 125 2e-30 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 119 2e-28 gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase... 111 4e-26 gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Jant... 105 2e-24 gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Jant... 102 2e-23 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 125 bits (315), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/247 (31%), Positives = 132/247 (53%), Gaps = 5/247 (2%) Query: 1 MNHYDFQGRSAIITGGAQGFGYAVAERLLQGKAKVVLWDMDEKALAAARAKLEPLGNV-E 59 M D G+ A++TG ++G G A+A+ L + AKV+ E AA E LGN + Sbjct: 1 MTTVDLSGQVALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAIS---EYLGNGGK 57 Query: 60 TVRVDIASQSEVQQAIEATEKLTQSIDILVHSAGIAGQNNPVAEYSPEEWRRVIDIDLNG 119 V +D+ + I+ +K ++ ILV++AGI Q+ EEW VI +L Sbjct: 58 GVVLDVNDAARSVALIDEIQKEFGAVSILVNNAGIT-QDQLAMRMKDEEWDSVIATNLTA 116 Query: 120 AFYVNQVVVQRMIAQNYGRIVNIASIAGKEGNPTASAYSAAKAGMIALTKSLGKETATRN 179 +++ V++ M+ GRI+NI S+ G GN Y+AAKAG+ ++++L +E +RN Sbjct: 117 VGRLSRAVLRGMMKAKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRN 176 Query: 180 IAVNAITPAAAQTRILEQCTQAHIDYMLSKIPRARFVKVEELAAMVAWLVSEENSFTTAS 239 I VN I P T + + ++ I +L ++P R E++AA V++L S + S+ T + Sbjct: 177 ITVNCIAPGFIDTDMTKTLSEQQIAALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGT 236 Query: 240 VFDLSGG 246 ++GG Sbjct: 237 TLHVNGG 243 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 119 bits (297), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 130/245 (53%), Gaps = 4/245 (1%) Query: 9 RSAIITGGAQGFGYAVAERLLQGKAKVV--LWDMDEKALAAARAKLEPLGNVETVRVDIA 66 R A++TGG G G A+ +L +VV ++KA + E + D++ Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPGNKKADEWLKLMKESGYDFHAYPCDVS 62 Query: 67 SQSEVQQAIEATEKLTQSIDILVHSAGIAGQNNPVAEYSPEEWRRVIDIDLNGAFYVNQV 126 QQ + EK +D+LV++AGI ++ + +W V+ +L+ F + + Sbjct: 63 DYDSAQQCVAQIEKEMGPVDVLVNNAGIT-RDITFKKMGKPDWDAVMATNLDSVFNMTKP 121 Query: 127 VVQRMIAQNYGRIVNIASIAGKEGNPTASAYSAAKAGMIALTKSLGKETATRNIAVNAIT 186 V M+ + +GRI+NI+S+ G++G + YSAAKAGM TK+L E A + + VN I+ Sbjct: 122 VCDGMVERGWGRIINISSVNGQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTIS 181 Query: 187 PAAAQTRILEQCTQAHIDY-MLSKIPRARFVKVEELAAMVAWLVSEENSFTTASVFDLSG 245 P T+++ Q +D ++ +IP R K EE+A +VA+L S+E +F T + ++G Sbjct: 182 PGYIGTKMVMAIPQDVLDTKIVPQIPMGRLGKPEEIAGLVAYLASDEAAFLTGANIAING 241 Query: 246 GRATY 250 G+ Y Sbjct: 242 GQHMY 246 >gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase [Janthinobacterium sp. Marseille] Length = 264 Score = 111 bits (278), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/261 (29%), Positives = 128/261 (49%), Gaps = 16/261 (6%) Query: 1 MNHYDFQGRSAIITGGAQGFGYAVAERLLQGKAKVVLWDM-DEKALAAARAKLEPLGNVE 59 M G++A++TG G G +A+ L Q A +VL D + +A L V+ Sbjct: 1 MQKAPLHGKTALVTGSTSGIGLGIAQALAQQGADIVLNGFGDANEIKTLQAALMRNYGVK 60 Query: 60 TVR--VDIASQSEVQQAIEATEKLTQSIDILVHSAGIAGQNNPVAEYSPEEWRRVIDIDL 117 V D++ +E++ + + +DILV++AGI + ++ E+W +I I+L Sbjct: 61 CVHHPADMSKPAEIEAMMAFAAQQFGRVDILVNNAGIQ-HTETIEDFPVEKWDAIIAINL 119 Query: 118 NGAFYVNQVVVQRMIAQNYGRIVNIASIAGKEGNPTASAYSAAKAGMIALTKSLGKETAT 177 + AF+ ++ + M A+N+GRI+NIAS+ G G+ SAY AAK G++ LTK E A Sbjct: 120 SSAFHTTRLALPMMQAKNWGRIINIASVHGLVGSVQKSAYVAAKHGIVGLTKVTALEMAH 179 Query: 178 RNIAVNAITPAAAQTRILEQCTQAHI------------DYMLSKIPRARFVKVEELAAMV 225 I NAI P T ++++ A D + K P FV ++L A+ Sbjct: 180 TGITCNAICPGWVLTPLVQKQVDARAAREGLSDEAAKKDLVSEKQPSGEFVTPQQLGALA 239 Query: 226 AWLVSEENSFTTASVFDLSGG 246 +L SE + +++ GG Sbjct: 240 VFLCSEAAVQVRGAAWNMDGG 260 >gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 272 Score = 105 bits (263), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 9/221 (4%) Query: 5 DFQGRSAIITGGAQGFGYAVAERLLQGKAKVVLWDMDEKALAAARAKLEPLGNV-ETVRV 63 +F+G+ A++TG + G G A+ L A+V+L L RA++E G + V + Sbjct: 20 NFEGKVALVTGASSGLGARFAKVLAMAGAQVILASRRVDRLKELRAEIEAEGGAAQVVSL 79 Query: 64 DIASQSEVQQAIEATEKLTQSIDILVHSAGIAGQNNPVAEYSPEEWRRVIDIDLNGAFYV 123 D+ + ++ AI E T +IDILV+++G++ V + +PE++ ++D + GAF+V Sbjct: 80 DVTDYASIKSAIAHAETETGAIDILVNNSGVSASQRLV-DVTPEDYAHMMDTNQRGAFFV 138 Query: 124 NQVVVQRMIAQNYG------RIVNIASIAGKEGNPTASAYSAAKAGMIALTKSLGKETAT 177 Q V +RMIA++ G RI+NI S+AG P Y +KA ++ +TK++ E Sbjct: 139 AQEVAKRMIARHKGDPKKQHRIINIGSVAGLRVVPELGLYCMSKAAVVHMTKAMAVEWGK 198 Query: 178 RNIAVNAITPAAAQTRI-LEQCTQAHIDYMLSKIPRARFVK 217 I NAI P T + L+ +L +PR R K Sbjct: 199 FGINTNAICPGYIGTEMNLDYFQSEQGQQVLGMLPRKRLGK 239 >gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 246 Score = 102 bits (254), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 77/243 (31%), Positives = 125/243 (51%), Gaps = 6/243 (2%) Query: 9 RSAIITGGAQGFGYAVAERLLQ-GKAKVVLWDMDEKALAAARAKLEPLGN-VETVRVDIA 66 + AIITG ++G G A+AERL Q G A V+ + A AKL+ + V+ D+A Sbjct: 7 KVAIITGASRGIGAAIAERLAQDGFAVVINYASSATEADALVAKLQAAQHEAIAVKADVA 66 Query: 67 SQSEVQQAIEATEKLTQSIDILVHSAGIAGQNNPVAEYSPEEWRRVIDIDLNGAFYVNQV 126 + ++V++ + TE+ +D+L+++AGI Q +AE S E + R I++ G F + Sbjct: 67 NSADVRRLFDETEQKLGKVDVLINNAGIL-QMASLAETSDELFERTFSINVRGTFNTLRE 125 Query: 127 VVQRMIAQNYGRIVNIASIAGKEGNPTASAYSAAKAGMIALTKSLGKETATRNIAVNAIT 186 R+ + GR+VN +S P S Y+ +KA + LT KE RNI VNA+ Sbjct: 126 AATRL--NDGGRVVNFSSTTVAMSLPNYSVYTGSKAAVEVLTPIFAKEMRGRNITVNAVA 183 Query: 187 PAAAQTRI-LEQCTQAHIDYMLSKIPRARFVKVEELAAMVAWLVSEENSFTTASVFDLSG 245 P T + T+A I + + P R + +++AA V++LV + + V +G Sbjct: 184 PGPVATDLFFNGKTEAQIQQLANMPPLQRLGQPDDIAAAVSFLVGRDGGWINGQVLRANG 243 Query: 246 GRA 248 G A Sbjct: 244 GLA 246 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.129 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 522,138 Number of extensions: 18209 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 122 Number of HSP's successfully gapped: 21 Length of query: 250 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 169 Effective length of database: 921,564 Effective search space: 155744316 Effective search space used: 155744316 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)