BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1069.p (548 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 526 e-150 gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis pro... 493 e-140 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 470 e-134 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 456 e-129 gi|152981471|ref|YP_001352860.1| methyl-accepting chemotaxis pro... 455 e-129 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 526 bits (1354), Expect = e-150, Method: Compositional matrix adjust. Identities = 295/517 (57%), Positives = 367/517 (70%), Gaps = 3/517 (0%) Query: 1 MSYLANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAQATDEMMHEPLTKERLVSDWY 60 M + +NMKIG RL LGF V+LA + + A I +L ++ T M+ P+ KER+VSDW Sbjct: 1 MIFFSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWA 60 Query: 61 RTIHTSVRRTTAIAKSADPSLAAYFAEDAAAASRMSTAQQKAIEALIESDEEKTAFAKLG 120 S+ RT +AKSADP+LA + A+ AA S+ S + +E L+ +D+EK +AK+ Sbjct: 61 AITKASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAKIL 120 Query: 121 QVRKDYIKYRDAISKAKADGQPEEAARILAGPFDVAAKGYLDLLQQLLDLQRANIDQVAA 180 VRK ++ R+ + K K +G+ EAA+ F AA + + + ++L+R +D A Sbjct: 121 DVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAGTA 180 Query: 181 NIQQVYHESRNMMLALAVLQVVLGWLFARSLALGITRPLEQAVDVAQAVAAGDLTTRIDE 240 + V S ++ L+ + + G A L +GITRPL+ AVD A+ VA GDLT I Sbjct: 181 QLSDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDIK- 239 Query: 241 KLAARSDETGKLMHALHTMTGNLARIVGQVRSGTDAITTASSEIATGNLDLSARTERQAG 300 A DE G+L+ AL M L RIVG+VR GT+ ITTAS+EIA GNLDLS+RTE+QA Sbjct: 240 --AESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQAS 297 Query: 301 ALEETASAMEELTSTVSQNASNARQANQLAASASSVAQQGGDVVSQVISTMGSINASSRK 360 +LEETAS+MEELTSTV QNA NARQANQLA SAS VA +GGDVVSQV+ TM SIN SSRK Sbjct: 298 SLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRK 357 Query: 361 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKIL 420 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSASAAKEIK L Sbjct: 358 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKAL 417 Query: 421 IDDSVSKVGTGSELVTRAGSTMDEVVASVRQVAQIVAEISAASSEQSDGISQVNLAINDM 480 I DSV KV TG++LV AG+TMDE+V S+R+V I+ EI+AAS EQS GI Q+N AI M Sbjct: 418 IGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQM 477 Query: 481 DQTTQQNAALVEQAAAAAESMQEQAARLSQVVSQFKL 517 D TQQNA+LVE+AAAAAESMQ+QA +L QVV FKL Sbjct: 478 DHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKL 514 >gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 549 Score = 493 bits (1270), Expect = e-140, Method: Compositional matrix adjust. Identities = 294/550 (53%), Positives = 381/550 (69%), Gaps = 20/550 (3%) Query: 1 MSYLANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAQATDEMMHEPLTKERLVSDWY 60 MS+L+N +IG RLA+GF ++LA + A+++ + A+AT MM +PL KER+ SDWY Sbjct: 1 MSFLSNFRIGTRLAIGFILVLALSVASTAIALIHARQNAEATRLMMEKPLAKERITSDWY 60 Query: 61 RTIHTSVRRTTAIAKSADPSLAAYFAEDAAAASRMSTAQQKAIEALIESDEEKTAFAKLG 120 I++++ RT+ IA+S D +L+ FA+ A +++ +A K++E +I SD E+ + + Sbjct: 61 VFIYSAIARTSMIARSTDDTLSDVFADVIADSTKQGSALLKSLEGMITSDAERKLYQQTI 120 Query: 121 QVRKDYIKYRDAISKAKADGQPEEAARILAGPFDVAAKGYLDLLQQLLDLQRANIDQVAA 180 ++RK Y K ++ + AK G EA R F AAK Y + + + L +QR IDQ++ Sbjct: 121 ELRKAYQKGKEDVMNAKKGGNKAEAERAYLQIFLPAAKAYQEKVLEFLSVQRKAIDQISR 180 Query: 181 NIQQVYHESRNMMLALAVLQVVLGWLFARSLALGITRPLEQAVDVAQAVAAGDLTTRIDE 240 +I + S N+M+ L VL ++LG A + IT+PL A+DVA A GDLT I + Sbjct: 181 DIDDAHQRSLNLMIGLGVLLILLGAACAIVITRSITKPLRSAIDVASRAADGDLTGDIGK 240 Query: 241 KLAARSDETGKLMHALHTMTGNLARIVGQVRSGTDAITTASSEIATGNLDLSARTERQAG 300 DE G LM AL M L +IV V++GTD I TAS+EIA GNLDLS+RTE+QA Sbjct: 241 P---SKDEIGDLMRALGGMNDGLKKIVNDVKAGTDFINTASAEIAHGNLDLSSRTEQQAA 297 Query: 301 ALEETASAMEELTSTVSQNASNARQANQLAASASSVAQQGGDVVSQVISTMGSINASSRK 360 +LEETAS+MEELTSTV QNA NA+QANQLA SAS VA +GG VV ++ISTMG+IN+SSRK Sbjct: 298 SLEETASSMEELTSTVKQNAENAQQANQLAVSASDVAAKGGAVVKEMISTMGAINSSSRK 357 Query: 361 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKIL 420 IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK L Sbjct: 358 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKSL 417 Query: 421 IDDSVSKVGTGSELVTRAGSTMDEVVASVRQVAQIVAEISAASSEQSDGISQVNLAINDM 480 I DSVS V GS+LV+ AG TMD+VV S+R V I+ EI AAS EQS GI QVN AI+ M Sbjct: 418 IGDSVSNVDAGSKLVSEAGKTMDDVVNSIRHVTDIMNEIMAASQEQSSGIEQVNTAISQM 477 Query: 481 DQTTQQNAALVEQAAAAAESMQEQAARLSQVVSQFKL-----------------LAHNEL 523 DQ TQQNAALVE+AAAA++S+++QA +L+Q+V+ FKL LAH+ Sbjct: 478 DQVTQQNAALVEEAAAASQSLRDQADKLAQIVNVFKLDERQPASAQAVRTEHHSLAHDAH 537 Query: 524 AELGVGAAPA 533 L AAPA Sbjct: 538 TSLPFNAAPA 547 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 470 bits (1210), Expect = e-134, Method: Compositional matrix adjust. Identities = 277/514 (53%), Positives = 355/514 (69%), Gaps = 3/514 (0%) Query: 4 LANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAQATDEMMHEPLTKERLVSDWYRTI 63 + N+KI RL+ GFA++L ++ + I RLQ + + D M L KERL +W + Sbjct: 3 ITNLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLSAV 62 Query: 64 HTSVRRTTAIAKSADPSLAAYFAEDAAAASRMSTAQQKAIEALIESDEEKTAFAKLGQVR 123 + RT A AK+ A+F + S + QK IE++I++ E+K F +L R Sbjct: 63 DVNGARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPEDKRLFEELVVAR 122 Query: 124 KDYIKYRDAISKAKADGQPEEAARILAGPFDVAAKGYLDLLQQLLDLQRANIDQVAANIQ 183 Y R + K KA+G+ EA ++ A Y + + +L ++ ID+ +IQ Sbjct: 123 NAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEAGTSIQ 182 Query: 184 QVYHESRNMMLALAVLQVVLGWLFARSLALGITRPLEQAVDVAQAVAAGDLTTRIDEKLA 243 + R++++ L V LG FA LA+ ITRPL +AV VA+ VA+GDL+ +I+ Sbjct: 183 SAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLSAKIE---V 239 Query: 244 ARSDETGKLMHALHTMTGNLARIVGQVRSGTDAITTASSEIATGNLDLSARTERQAGALE 303 + +DETG+LM AL MT +L + V +VRSGT+ I TAS +IA+GNLDLS+RTE QA +L Sbjct: 240 SSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQASSLG 299 Query: 304 ETASAMEELTSTVSQNASNARQANQLAASASSVAQQGGDVVSQVISTMGSINASSRKIVD 363 ETA++M +LTSTV QNA NARQAN LA SAS VA +GG VVS+V+ TM SIN S+RKIVD Sbjct: 300 ETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESARKIVD 359 Query: 364 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKILIDD 423 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIKILI D Sbjct: 360 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKILIGD 419 Query: 424 SVSKVGTGSELVTRAGSTMDEVVASVRQVAQIVAEISAASSEQSDGISQVNLAINDMDQT 483 SV KV GS+LV AGSTM+E+V SV++V I+AEI AAS EQS GI QVN AI MDQ Sbjct: 420 SVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQMDQV 479 Query: 484 TQQNAALVEQAAAAAESMQEQAARLSQVVSQFKL 517 TQQNAALVE+AAAAAES+Q+QA L++VVSQFKL Sbjct: 480 TQQNAALVEEAAAAAESLQDQAGNLARVVSQFKL 513 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 456 bits (1172), Expect = e-129, Method: Compositional matrix adjust. Identities = 277/521 (53%), Positives = 353/521 (67%), Gaps = 15/521 (2%) Query: 4 LANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAQATDEMMHEPLTKERLVSDWYRTI 63 ++N+KIG RL L FAVIL + ++ + +WRLQ +AQAT M E KERL +WY Sbjct: 3 ISNLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQATVHM-EEAAHKERLTHEWYLGN 61 Query: 64 HTSVRRTTAIAKSADPSLAAYFAEDAAAASRMSTAQQKAIEALIESDEEKTAFAKLGQVR 123 + RT A +S D + F ++ S+ + Q I ALI S+E K + +G+ R Sbjct: 62 VANAIRTAARIRSNDAEIQKQFQKEMELQSQEISKLQNEIVALIHSEEGKKLMSVVGEKR 121 Query: 124 KDYIKYRDAISKAKADGQPEEAA---RILAGPFDVAAKGYLDLLQQLLDLQRANIDQVAA 180 Y+ R + K KA+ +++ D A Y + +Q ++ Q+ + A Sbjct: 122 TAYMDIRKDVFKLKAEANAAADLAATKLVETKMDPAMAAYNESVQAVVSFQQVIFQRAKA 181 Query: 181 NIQQVYHESRNMMLALA----VLQVVLGWLFARSLALGITRPLEQAVDVAQAVAAGDLTT 236 ++ +Y R +++ L +L L WL +RS ITRPL+ AV VA+ VA+GDL Sbjct: 182 DVDALYASGRTILITLGSIALILSAFLAWLLSRS----ITRPLDYAVSVARTVASGDLRN 237 Query: 237 RIDEKLAARSDETGKLMHALHTMTGNLARIVGQVRSGTDAITTASSEIATGNLDLSARTE 296 +I ++ +DETG+L+ AL M L + V QVR+G + I TAS++IA GNLDLS+RTE Sbjct: 238 KIQ---SSSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTE 294 Query: 297 RQAGALEETASAMEELTSTVSQNASNARQANQLAASASSVAQQGGDVVSQVISTMGSINA 356 QA +LEETAS+MEELTSTV QNA NARQANQLA SAS VA++GG+VVS+V+ TM INA Sbjct: 295 EQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQINA 354 Query: 357 SSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKE 416 S++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKE Sbjct: 355 SAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKE 414 Query: 417 IKILIDDSVSKVGTGSELVTRAGSTMDEVVASVRQVAQIVAEISAASSEQSDGISQVNLA 476 IK LI DSV KV GS+LV AG TMDEVV SV+ V I++EI AAS EQS GI QVN A Sbjct: 415 IKTLIGDSVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQVNQA 474 Query: 477 INDMDQTTQQNAALVEQAAAAAESMQEQAARLSQVVSQFKL 517 I MDQ TQQNAALVE+AAAAAES+ EQAA+L++ VS FKL Sbjct: 475 IGQMDQVTQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKL 515 >gi|152981471|ref|YP_001352860.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 455 bits (1170), Expect = e-129, Method: Compositional matrix adjust. Identities = 280/514 (54%), Positives = 362/514 (70%), Gaps = 2/514 (0%) Query: 4 LANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAQATDEMMHEPLTKERLVSDWYRTI 63 +ANMKIG RL LGF +IL + + A I RL+ I A+ ++ + L K++ DW Sbjct: 3 IANMKIGVRLGLGFGLILLLVAAMGATGIMRLENINNASRNLVDQSLKKQKAAEDWLLAT 62 Query: 64 HTSVRRTTAIAKSADPSLAAYFAEDAAAASRMSTAQQKAIEALIESDEEKTAFAKLGQVR 123 + RT A+ KSADP +F + A S+ T Q +EA + + EEK FA++G+ R Sbjct: 63 SVNGVRTVALVKSADPETQQFFQKAITAQSKQITDIQNGVEASLVTPEEKQLFAEVGKKR 122 Query: 124 KDYIKYRDAISKAKADGQPEEAARILAGPFDVAAKGYLDLLQQLLDLQRANIDQVAANIQ 183 Y+ R AI K G EA +++ A Y++ ++++L + + +I Sbjct: 123 AVYVDLRKAIFAVKEKGNEAEAKQLIDSKMIPALDAYVESVREVLAHYQNEVKLADQSIT 182 Query: 184 QVYHESRNMMLALAVLQVVLGWLFARSLALGITRPLEQAVDVAQAVAAGDLTTRIDEKLA 243 Y R ++ AV+ ++LG L A L +GITRPL++A+ VA++VA GDLT R + Sbjct: 183 ADYASGRMTLIIGAVIALLLGALIAWRLTVGITRPLQEALSVAESVAEGDLTAR--STMP 240 Query: 244 ARSDETGKLMHALHTMTGNLARIVGQVRSGTDAITTASSEIATGNLDLSARTERQAGALE 303 A +DE G L+ AL M +LA+ V Q+R GTD I TASSEIA+GNLDLS+RTE+QA +LE Sbjct: 241 AANDEAGLLLKALRRMQDSLAKTVTQIRMGTDTIATASSEIASGNLDLSSRTEQQASSLE 300 Query: 304 ETASAMEELTSTVSQNASNARQANQLAASASSVAQQGGDVVSQVISTMGSINASSRKIVD 363 ETAS+MEELTSTV QNA N+RQANQLA +AS+VA +GG VVS+V++TMGSIN S++KIVD Sbjct: 301 ETASSMEELTSTVKQNADNSRQANQLAVAASAVAVKGGSVVSEVVNTMGSINESAKKIVD 360 Query: 364 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKILIDD 423 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI D Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKALIGD 420 Query: 424 SVSKVGTGSELVTRAGSTMDEVVASVRQVAQIVAEISAASSEQSDGISQVNLAINDMDQT 483 SV KV GS+LV AG+TMDE+V V++VA I+AEI+AAS EQSDGI QVN AI MDQ Sbjct: 421 SVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAIGQMDQV 480 Query: 484 TQQNAALVEQAAAAAESMQEQAARLSQVVSQFKL 517 TQQNAALVE+AAAAAES+Q+QA L+Q VS F++ Sbjct: 481 TQQNAALVEEAAAAAESLQDQAKNLAQAVSVFQI 514 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.313 0.124 0.320 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 793,881 Number of extensions: 22880 Number of successful extensions: 235 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 21 Length of query: 548 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 460 Effective length of database: 895,685 Effective search space: 412015100 Effective search space used: 412015100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)