BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1068.p (436 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980724|ref|YP_001353975.1| two-component system sensor kin... 635 0.0 gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Jant... 114 2e-26 gi|152982458|ref|YP_001353582.1| sensor histidine kinase/respons... 112 7e-26 gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcr... 109 4e-25 gi|152982775|ref|YP_001354611.1| two-components system response ... 108 9e-25 >gi|152980724|ref|YP_001353975.1| two-component system sensor kinase of the phosphate regulon [Janthinobacterium sp. Marseille] Length = 443 Score = 635 bits (1638), Expect = 0.0, Method: Compositional matrix adjust. Identities = 308/436 (70%), Positives = 357/436 (81%), Gaps = 1/436 (0%) Query: 1 MSPQLLFWIPAVLRLVLCLGGAGVVGFFFGPIVGLVTAVLGVGAMMIAHLHYLLRLSTWL 60 M+PQLLFW+PA LRL + L +G+VG+FFG +GL TA++ + +++ L YL +LS WL Sbjct: 1 MNPQLLFWVPASLRLSIILIFSGIVGYFFGLSIGLATALVLMIILIVIQLKYLYQLSGWL 60 Query: 61 DDAGQSRLPDGWGAWTDVYARLYRMHRDDEKNQAELTEWLARFRQAMSLLPDGVVIMDDV 120 D +LPDGWGAWTD+++RLYR+ RDDE+N+AELTEWLARFRQAMSLLPDGVVIMDDV Sbjct: 61 DHPDSEKLPDGWGAWTDIFSRLYRLRRDDERNRAELTEWLARFRQAMSLLPDGVVIMDDV 120 Query: 121 LFLEWCNPSAQQHLGLKLDRDKGMRVTNLIRNPAFIDYIILGRYEQPLTLALHERKLIIQ 180 LFLEWCNP+A++HLGL RDKGMRVTNLIRNP FIDYIILGRY+QPLTL L +RKLI+Q Sbjct: 121 LFLEWCNPAAEKHLGLNNGRDKGMRVTNLIRNPDFIDYIILGRYDQPLTLTLKDRKLIVQ 180 Query: 181 IIPFENRRQILVTHDVTESQRIDMMRRDFVANASHELRTPLTVINGFLEIALAQPNLDHA 240 IIPFENRRQILVTHD TES RI+MMRRDF+ANASHELRTPLTVINGFLEIA QPNLD Sbjct: 181 IIPFENRRQILVTHDATESDRIEMMRRDFIANASHELRTPLTVINGFLEIAQGQPNLDPD 240 Query: 241 TRTAHLKLMTEQGQRMQNLIDDMLTLTRLESIDYPLRSEVLRVRPLLERIAEEGRALSAG 300 R +HL LM EQG+RMQNL++DMLTLTRLESIDYPLR E + + LL +I +E ALS G Sbjct: 241 VRMSHLNLMIEQGKRMQNLVEDMLTLTRLESIDYPLRPEHVNIGNLLRQILQEAEALSGG 300 Query: 301 KHDIRLIVDGPDLKGSADELRSAFTNLVTNAVRYTPEGGTITLRWESDEEGAHFSVQDTG 360 +H I L V+GPD++GS DELRSAF NLV+NAVRYTPEGG I ++W+ G FSV+D+G Sbjct: 301 RHVISLTVEGPDIQGSTDELRSAFGNLVSNAVRYTPEGGRIDIKWQDAGNGPQFSVKDSG 360 Query: 361 IGISPEHISRLTERFYRVDKSRSRETQGTGLGLAIVRHVLLRHHATLDIASVPDHGSTFT 420 IGI EHI RLTERFYRVDKSRSRETQGTGLGLAIV+HVLLRH A L I S PD GSTFT Sbjct: 361 IGIRAEHIVRLTERFYRVDKSRSRETQGTGLGLAIVKHVLLRHGAVLGIESQPDAGSTFT 420 Query: 421 VHFPATQTIADYAPQQ 436 V F TI D P + Sbjct: 421 VKF-DLNTIKDNDPNK 435 >gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Janthinobacterium sp. Marseille] Length = 466 Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 115/220 (52%), Gaps = 7/220 (3%) Query: 209 FVANASHELRTPLTVINGFLEIALAQPNLDHATRTAHLKLMTEQGQRMQNLIDDMLTLTR 268 F A+ +H+LRTPL + ++AL Q L E+ +R+ +++ ML L R Sbjct: 250 FSADLAHDLRTPLNNLMVQTQVALVQAR-SVEDYQGLLISNVEEYERLTRMVESMLFLAR 308 Query: 269 LESIDYPLRSEVLRVRPLLERIAE--EGRALSAGKHDIRLIVD-GPDLKGSADELRSAFT 325 +E L L + L+RIA+ EG A AG +RL V+ G + A LR A Sbjct: 309 VEHTHVMLNKSALSLPEELQRIADYFEGLADEAG---VRLTVEAGGRVYADAILLRRAIG 365 Query: 326 NLVTNAVRYTPEGGTITLRWESDEEGAHFSVQDTGIGISPEHISRLTERFYRVDKSRSRE 385 NLV NA+ YTP G TI L+ +GA SV + G GI+ +HI + RFYR D +RS Sbjct: 366 NLVANAIPYTPRGATIVLKGVMTADGATVSVVNPGAGIAAQHIPHVFNRFYRGDAARSNS 425 Query: 386 TQGTGLGLAIVRHVLLRHHATLDIASVPDHGSTFTVHFPA 425 TGLGLAIV+ ++ H + S + + F++ FPA Sbjct: 426 ATSTGLGLAIVQSIMALHGGRATVTSEENGLTEFSLIFPA 465 >gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 1096 Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 121/257 (47%), Gaps = 20/257 (7%) Query: 186 NRRQILVTHDVTESQRID--------------MMRRDFVANASHELRTPLTVINGFLEIA 231 NR+ L+T ++ QR D + +VA SHELR+PL I G+ +I Sbjct: 613 NRQNELLTQEIDAHQRTDAALQSAKEAAESANQAKTRYVAGISHELRSPLNSILGYSQIL 672 Query: 232 LAQPNLDHATRTAHLKLMTEQGQRMQNLIDDMLTLTRLESIDYPLRSEVLRVRPLLERIA 291 L LD A RTA ++ + G+ + L+D++L L R+E+ L + ++ + Sbjct: 673 LKNEQLDAAPRTA-IQTIQRSGEHLLGLVDELLDLARIEADRMRLEPAPILFAAFIDDLL 731 Query: 292 EEGRALSAGKHDIRLIVDGPDLK----GSADELRSAFTNLVTNAVRYTPEGGTITLRWES 347 R + K G DL LR NL+TNA+R+T + G++TL E Sbjct: 732 SMVRPQAEAKGLRLQYTHGGDLPHYVLADGKRLRQILINLLTNALRFT-DTGSVTLHVEC 790 Query: 348 DEEGAHFSVQDTGIGISPEHISRLTERFYRVDKSRSRETQGTGLGLAIVRHVLLRHHATL 407 F V DTGIGI+ + R+ + F R R R G GLGLAI ++L + +L Sbjct: 791 TGVSMRFDVIDTGIGIAVQDRQRIFQPFERGAAGRLRGEPGAGLGLAITEKLILMMNGSL 850 Query: 408 DIASVPDHGSTFTVHFP 424 ++ S GSTF V P Sbjct: 851 NLISTQGQGSTFVVRLP 867 >gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 544 Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 118/223 (52%), Gaps = 14/223 (6%) Query: 199 SQRIDMMRRDFVANASHELRTPLTVINGFLEIALAQPNLDHATRTAHLKLMTEQGQRMQN 258 SQ I + +R F+A+A+H+++TPL + E+AL Q D L+ + + + Sbjct: 301 SQSIKVQKR-FIADAAHQMKTPLAGMRMQSELALRQ--TDQVEIHKSLEQLAKSSKSATR 357 Query: 259 LIDDMLTLTRLESIDYPLRS-EVLRVRPLLERIAEEGRALSAGKHDIRLIVDGPD----L 313 +I+ +L L R E+ R + L + L +E S K I L + PD + Sbjct: 358 MINQLLALARAENQTPTTRPLQPLELSELARDTVQEWVQTSFNKK-IDLGFEQPDYHIMV 416 Query: 314 KGSADELRSAFTNLVTNAVRYTPEGGTITLRWESDEEG--AHFSVQDTGIGISPEHISRL 371 G A LR NL+ NA+ YTP GG T+R +DEE A+ V+DTG GI+P R+ Sbjct: 417 NGDAIMLRELLNNLIDNALNYTPAGGHATVRVRADEEARLAYLEVEDTGPGIAPHEHKRI 476 Query: 372 TERFYRVDKSRSRETQGTGLGLAIVRHVLLRHHATLDIASVPD 414 ERFYR+ S +G+GLGLAIVR + +H A +DI + P+ Sbjct: 477 FERFYRILGSN---VEGSGLGLAIVREIAQQHGAEIDILNNPN 516 >gi|152982775|ref|YP_001354611.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 470 Score = 108 bits (269), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 11/227 (4%) Query: 209 FVANASHELRTPLTVINGFLEIALAQPNLDHATRTAHLKLMTEQGQRMQNLIDDMLTLTR 268 F+A+ +H+LRTP+ + E+AL + + R L + +R+ L+ +L+L R Sbjct: 250 FIADTAHQLRTPVAGLKAHAELALRETDPVQVKRA--LGHLYTSAERLSRLVSQLLSLAR 307 Query: 269 LESIDYPLRSEVLRVRPLLERIAEEGRALSAGKHDIRLIVDGPD----LKGSADELRSAF 324 E + + + L R A+E L A K I L + + L G A + Sbjct: 308 NEPNNVAVNFAPFDLNQLALRTAQEWVPL-AYKKQIDLGFETAEQTVLLNGEAARVTEMI 366 Query: 325 TNLVTNAVRYTPEGGTITLRWESDEEGAHFSVQDTGIGISPEHISRLTERFYRVDKSRSR 384 NLV NA+RYTP GG +T+R DEEGAH V D G I + R+ ERF+R+ Sbjct: 367 NNLVDNAIRYTPSGGRVTVRVHKDEEGAHLVVSDDGTRIPIDERQRIFERFHRL---LGN 423 Query: 385 ETQGTGLGLAIVRHVLLRHHATLDIASVPDH-GSTFTVHFPATQTIA 430 +G+GLGLAIV + H+A + + D G+TFTV FP T A Sbjct: 424 HEEGSGLGLAIVHEIATLHNARITLEDDIDGVGNTFTVTFPDTPVSA 470 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.139 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 969,372 Number of extensions: 39779 Number of successful extensions: 197 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 28 Length of query: 436 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 350 Effective length of database: 903,079 Effective search space: 316077650 Effective search space used: 316077650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)