BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1067.p (225 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980160|ref|YP_001353976.1| phosphate regulon two-component... 380 e-107 gi|152981322|ref|YP_001355016.1| two components system response ... 136 1e-33 gi|152981303|ref|YP_001354918.1| transcriptional regulatory prot... 124 5e-30 gi|152981350|ref|YP_001354553.1| two-components system response ... 121 4e-29 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 120 6e-29 >gi|152980160|ref|YP_001353976.1| phosphate regulon two-component response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 380 bits (976), Expect = e-107, Method: Compositional matrix adjust. Identities = 181/223 (81%), Positives = 200/223 (89%) Query: 3 TILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGLH 62 TILIVEDEP I EL+ FTLK AGW+ V NA AWDF+Q R PQL+LLDWMLPD+SGL Sbjct: 7 TILIVEDEPPIIELVTFTLKGAGWNVAAVQNAGDAWDFIQQRLPQLILLDWMLPDQSGLR 66 Query: 63 LLSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRK 122 LLSRIRADRQ +L +IMLTAKSMEEDKIAGLDNGADDY+TKPFSPRELTARI ALLRRK Sbjct: 67 LLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRRK 126 Query: 123 SPEHAQEVMSAGPITLDPASCSVSLDGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRV 182 +PEH+Q +M+AG I+LDP SCSVS++ +IDIGHAE+KLLKFFLAHPDRVFSRSQLLD+V Sbjct: 127 TPEHSQTLMTAGNISLDPVSCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQLLDKV 186 Query: 183 WGDHVVIEERTVDVHVLRLRKALRDAECLIKTVRSVGYMLSTK 225 WGDHVVIEERTVDVHVLRLRKAL+DAE LIKTVRSVGYMLSTK Sbjct: 187 WGDHVVIEERTVDVHVLRLRKALKDAEHLIKTVRSVGYMLSTK 229 >gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 136 bits (342), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 88/231 (38%), Positives = 135/231 (58%), Gaps = 12/231 (5%) Query: 4 ILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGLHL 63 ILIV+D+ I EL+A L++ G + + +N ++ + L++LD MLP GL L Sbjct: 7 ILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGLTL 66 Query: 64 LSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKS 123 +RA + + + V+MLTA++ E D+I GL+ GADDY++KPF+ REL ARI+++LRR Sbjct: 67 CRELRAGK-WRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRAR 125 Query: 124 --PEHAQ-----EVMSAGPITLD-PASCSVSLDGARIDIGHAEYKLLKFFLAHPDRVFSR 175 P + Q + + G LD A + G + + AEY+LL+ FL HP RV +R Sbjct: 126 MLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQRVLTR 185 Query: 176 SQLLDRVWGDHVVIEERTVDVHVLRLRKALRD---AECLIKTVRSVGYMLS 223 QLL+ G +R++D+ + RLR+ L+D IKT+RS GY+ S Sbjct: 186 DQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFS 236 >gi|152981303|ref|YP_001354918.1| transcriptional regulatory protein OmpR [Janthinobacterium sp. Marseille] Length = 233 Score = 124 bits (311), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 127/231 (54%), Gaps = 16/231 (6%) Query: 6 IVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQ-------LVLLDWMLPDR 58 ++ED+ +A ++A L + G F V+++ A + +Q +VLLD MLPD Sbjct: 1 MIEDDQRLASMVATYLNQNG---FEVTHSGTASEGLQQLQQAAATQAFAIVLLDLMLPDA 57 Query: 59 SGLHLLSRIRADRQ-LQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKA 117 GL + +IR Q L + ++MLTAK D++ GL+ GADDYI KPF PREL AR++A Sbjct: 58 DGLDVCRQIRGQTQPLASMPIVMLTAKGDPMDRVVGLELGADDYIPKPFEPRELLARLRA 117 Query: 118 LLRRKS--PEHAQEVMSAGPITLDPASCSVSLDGARIDIGHAEYKLLKFFLAHPDRVFSR 175 +LRR+ + + V+ G + +D + + LD + ++ LL RV SR Sbjct: 118 VLRRQQGVATNNERVLRFGRLEIDLDARVIRLDDQEKPVTSYQFNLLAAMADRAGRVLSR 177 Query: 176 SQLLDRVWGDHVVIEERTVDVHVLRLRKALRDAECLIK---TVRSVGYMLS 223 QL+D V G+ + +R++DVH+ RLR A+ D K TVR GY+ + Sbjct: 178 EQLMDVVKGEPLEAFDRSIDVHIGRLRAAIEDDPKQPKRIITVRGAGYVFA 228 >gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 233 Score = 121 bits (303), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 7/221 (3%) Query: 4 ILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGLHL 63 IL+ ED+ +A+ + +L+++G+++ V N A A + + L++LD LP SGL + Sbjct: 3 ILLAEDDSVLADGLTRSLRQSGYATDCVKNGAEADSVLSTQDFDLLILDLGLPKMSGLEV 62 Query: 64 LSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKS 123 L R+RA +L V++LTA E ++ GLD GADD++ KPF+ EL AR++AL RR + Sbjct: 63 LQRLRARNS--RLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120 Query: 124 PEHAQEVMSAGPITLDPASCSVSLDGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRV- 182 V+ GP++ D ++ +D+ E LL+ L R+ S+ QL+D + Sbjct: 121 G-GGPTVIKHGPLSYDQVGRIAYINDQMLDLSARELGLLEVLLQRSGRLVSKEQLVDHLC 179 Query: 183 -WGDHVVIEERTVDVHVLRLRKALRDAECLIKTVRSVGYML 222 W + V ++V+V RLRK + I TVR +GY L Sbjct: 180 EWSEEV--SNNAIEVYVHRLRKKIEIGGLRIATVRGLGYCL 218 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 120 bits (302), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 116/222 (52%), Gaps = 6/222 (2%) Query: 4 ILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGLHL 63 IL+VEDE E + L+EAG+ + A + +LV+LD MLP G L Sbjct: 3 ILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGWQL 62 Query: 64 LSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKS 123 L +R +++ V+ LTA+ ED++ GL+ GADDY+ KPFS EL AR++ LLRR Sbjct: 63 LRELR---KVRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRR-G 118 Query: 124 PEHAQEVMSAGPITLDPASCSVSLDGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRVW 183 P ++ + +D V+ +G R+D+ E+ LL V SRS + +VW Sbjct: 119 PVRESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVW 178 Query: 184 GDHVVIEERTVDVHVLRLRKALRD--AECLIKTVRSVGYMLS 223 + + VDV + RLR L D LI+TVR +GY+L Sbjct: 179 DMNFDSDTNVVDVAIRRLRAKLDDPHPRKLIQTVRGIGYVLE 220 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 497,310 Number of extensions: 19011 Number of successful extensions: 152 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 29 Length of query: 225 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 145 Effective length of database: 925,261 Effective search space: 134162845 Effective search space used: 134162845 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)