BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1065.p (272 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980377|ref|YP_001353978.1| ABC-type phosphate transport sy... 484 e-138 gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 130 7e-32 gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type tr... 128 3e-31 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 119 2e-28 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 112 2e-26 >gi|152980377|ref|YP_001353978.1| ABC-type phosphate transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 260 Score = 484 bits (1245), Expect = e-138, Method: Compositional matrix adjust. Identities = 227/250 (90%), Positives = 239/250 (95%) Query: 23 KATLEVSQLNFYYGGFQGLKNINLNIWEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQR 82 K TLE++ LNF+YG FQGLKNINL+I + KVTAFIGPSGCGKSTLLRTFNRMYDLYPGQR Sbjct: 11 KKTLEIANLNFFYGSFQGLKNINLDIHDKKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQR 70 Query: 83 AEGKIIYAGNNILEPGQDLNMLRAKVGMVFQKPTPFPMSVYDNIAFGIRLYENLPKGEMD 142 AEGKI+Y G NILEPGQD+NMLRAKVGMVFQKPTPFPMSVYDNIAFG+RLYENLPKGEMD Sbjct: 71 AEGKIMYHGKNILEPGQDVNMLRAKVGMVFQKPTPFPMSVYDNIAFGVRLYENLPKGEMD 130 Query: 143 ERVEWALNKAALWGEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSALDPI 202 ERVEWALNKAALW EVKDKLHKSGLSLSGGQQQRLCIARGVAVKP+VLLLDEPTSALDPI Sbjct: 131 ERVEWALNKAALWTEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPDVLLLDEPTSALDPI 190 Query: 203 STAKVEELIGELKNDYTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNPVRKE 262 STAK+EELI ELK DYTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNP +K+ Sbjct: 191 STAKIEELISELKGDYTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNPNKKD 250 Query: 263 TQDYITGRFG 272 TQDYITGRFG Sbjct: 251 TQDYITGRFG 260 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 130 bits (328), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 127/235 (54%), Gaps = 11/235 (4%) Query: 35 YGGFQGLKNINLNIWEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAEGKIIYAGNNI 94 YG Q LK I +++ G+V A IG SG GKSTLLR N + + EG I AG+++ Sbjct: 13 YGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESI-----DEGSISVAGSHL 67 Query: 95 LEPGQDLNMLRAKVGMVFQKPTPFP-MSVYDNIAFGIRLYENLPKGEMDERVEWALNKAA 153 + +L LR KVGM+FQ+ FP +SV NI + + + + + L K Sbjct: 68 GKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKDARALAMKNLEKVG 127 Query: 154 LWGEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSALDPISTAKVEELIGE 213 L +K LSGGQQQR+ IAR ++++P+ LL DE TSALDP +V ++ Sbjct: 128 L----SEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEVLNVVRG 183 Query: 214 LKND-YTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNPVRKETQDYI 267 L ++ T+ +VTH M+ A D +M+ G++ E G + IF NP E + ++ Sbjct: 184 LAHEGMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPATPELKQFL 238 >gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 128 bits (322), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 15/246 (6%) Query: 26 LEVSQLNFYYGGFQGLKNINLNIWEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAEG 85 +E+ +++ +YG FQ L + + +G V GPSG GKSTL++T N L P Q +G Sbjct: 2 IELDKVSKWYGNFQVLTDCTTQVAKGDVVVVCGPSGSGKSTLIKTVN---GLEPFQ--QG 56 Query: 86 KIIYAGNNILEPGQDLNMLRAKVGMVFQKPTPFP-MSVYDNIAFG--IRLYENLPKGEMD 142 KI G ++ +P +L+ LR+++GMVFQ FP +S+ +N+ L +LP + Sbjct: 57 KITVDGISVGDPKTNLSSLRSRIGMVFQNFELFPHLSISENLTLAQVKVLKRSLP--DAT 114 Query: 143 ERVEWALNKAALWGEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSALDPI 202 ER L++ L KDK LSGGQQQR+ IAR +++ P +L DEPTSALDP Sbjct: 115 ERGLKYLDRVGLIAH-KDKFPGQ---LSGGQQQRVAIARALSMDPIAMLFDEPTSALDPE 170 Query: 203 STAKV-EELIGELKNDYTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNPVRK 261 +V + ++G + T+ +VTH M A + ++ +M G +VE D+ F Sbjct: 171 MINEVLDVMVGLAQEGMTMMVVTHEMGFAKKVANRVIFMDKGLIVEDCTKDEFFGTTRSD 230 Query: 262 ETQDYI 267 +D++ Sbjct: 231 RARDFL 236 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 119 bits (297), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 126/241 (52%), Gaps = 21/241 (8%) Query: 25 TLEVSQLNFYYGGFQGLKNINLNIWEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAE 84 ++EV + +G F L N++L+ G++TA +GPSGCGK+TLLR + Q Sbjct: 2 SIEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLE-----QPDH 56 Query: 85 GKIIYAGNNILEPGQDLNMLRAKVGMVFQKPTPFP-MSVYDNIAFGIRLYENLPK---GE 140 G+++ G E ++ +VG VFQ F M+V++NIAFG+R+ + + Sbjct: 57 GQVLLDG----EDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQ 112 Query: 141 MDERVEWALNKAAL-WGEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSAL 199 + E+V L L W + D+ LSGGQ+QR+ +AR +AV+P VLLLDEP AL Sbjct: 113 IKEKVTKLLELVQLDW--LADRYPP---QLSGGQRQRIALARALAVEPRVLLLDEPFGAL 167 Query: 200 DPISTAKVEELIGELKNDYTIA--IVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMN 257 D ++ + L +D + VTH+ ++A +D M G + + G ++ N Sbjct: 168 DAKVRKELRRWLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNN 227 Query: 258 P 258 P Sbjct: 228 P 228 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 112 bits (281), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/250 (35%), Positives = 125/250 (50%), Gaps = 23/250 (9%) Query: 24 ATLEVSQLNFYYGGFQGLKNINLNIWEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRA 83 A LE+ L +G + NI+L+I G+ +GPSGCGK+TLLR Sbjct: 2 ALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMI------------ 49 Query: 84 EGKIIYAGNNILEPGQDLNML---RAKVGMVFQKPTPFP-MSVYDNIAFGIRLYENLPKG 139 G + IL G DL + + V VFQ FP M+V NIAF + + N PK Sbjct: 50 AGFDVPDAGQILLDGVDLTGVPPEQRPVRTVFQNYALFPHMTVGGNIAFPLEM-ANTPKA 108 Query: 140 EMDERVEWALNKAALWGEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSAL 199 E+ ++V+ AL L G H+ LSGGQ+QR+ IAR + +P++LLLDEP SAL Sbjct: 109 EIQKKVDEALEDVRLTGFAARYPHE----LSGGQRQRVSIARALVTRPKLLLLDEPLSAL 164 Query: 200 DPISTAKVE-ELIGELKN-DYTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMN 257 D +++ ELI K T VTH+ +A S A M G++ + E +I+ Sbjct: 165 DAQLREQMQIELINLQKEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSY 224 Query: 258 PVRKETQDYI 267 P + D+I Sbjct: 225 PRSRFVADFI 234 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 609,978 Number of extensions: 24682 Number of successful extensions: 263 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 179 Number of HSP's successfully gapped: 63 Length of query: 272 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 190 Effective length of database: 917,867 Effective search space: 174394730 Effective search space used: 174394730 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)