BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1064.p
         (297 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979809|ref|YP_001353979.1| ABC-type phosphate transport sy...   449   e-128

>gi|152979809|ref|YP_001353979.1| ABC-type phosphate transport
           system, permease component [Janthinobacterium sp.
           Marseille]
          Length = 286

 Score =  449 bits (1156), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/281 (79%), Positives = 246/281 (87%)

Query: 15  QVVNPVYRRRLMQHRMGMLFSFLAMGLGLFVLAWILLTLVFKGVAALNLGLLTENTPGPG 74
           + +NPVYR+RL  HR+G+  SFLAM LGLF L WIL TLV KGV A+NL + T+ TP PG
Sbjct: 4   EAMNPVYRKRLFIHRVGIALSFLAMMLGLFFLMWILFTLVIKGVGAINLAIFTQTTPAPG 63

Query: 75  DAGGGLLNPIVGSLMMVGISTLISTPIGILAGVYLAEYGEESKLAQVTRFVTDIMLSAPS 134
             GGGL+N IVGSL+MVG +  ISTPIGILAG+YLAEYGE S  A++TRFVTDIMLSAPS
Sbjct: 64  SEGGGLMNAIVGSLLMVGAAVFISTPIGILAGIYLAEYGEVSWFAKITRFVTDIMLSAPS 123

Query: 135 IVIGLFIYAIYVANVNHFSGWAGTFAISLIAIPVVVRTTDNMLKLVPSGLREAAFALGAP 194
           IVIGLFIYAIYVANV HFSGWAG+FAISLIAIPVVVRTTDNML LVP+ LREAAFALGAP
Sbjct: 124 IVIGLFIYAIYVANVKHFSGWAGSFAISLIAIPVVVRTTDNMLNLVPTSLREAAFALGAP 183

Query: 195 RWKVAIIVRLRAVKAGVVTGVLLAVARISGETAPLLFTALNNQFFSTNMNRPIANLPVVI 254
           RW+VA  VRLRAVKAGV+TGVLLAVARISGETAPLLFTALNNQF+S NMN P+ANLPVVI
Sbjct: 184 RWRVATFVRLRAVKAGVITGVLLAVARISGETAPLLFTALNNQFYSANMNAPMANLPVVI 243

Query: 255 NQFAMSPYDNWVSLAWGGALLITFSVLLLNVLSRTLFKQQI 295
            QFAMSPYDNW SLAWGGALLITFSVL LN+LSR+LF Q+I
Sbjct: 244 YQFAMSPYDNWRSLAWGGALLITFSVLALNILSRSLFNQKI 284


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.326    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 660,822
Number of extensions: 28035
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 3
Length of query: 297
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 214
Effective length of database: 914,170
Effective search space: 195632380
Effective search space used: 195632380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)