BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1061.p
         (704 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979904|ref|YP_001353982.1| polyphosphate kinase [Janthinob...  1125   0.0  

>gi|152979904|ref|YP_001353982.1| polyphosphate kinase
           [Janthinobacterium sp. Marseille]
          Length = 737

 Score = 1125 bits (2910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/700 (77%), Positives = 607/700 (86%), Gaps = 3/700 (0%)

Query: 1   MTRKAKPESSTQPELPANTIYLNRELSQLAFNRRVLAQAEDDSVPLLERLRYLCICSSNL 60
           M +KA  E+ +   LP + IYLNRELSQLAFNRRVLAQAE+  VPLLERL+YLCI S+NL
Sbjct: 39  MHKKAAAEAVSAQVLPQSAIYLNRELSQLAFNRRVLAQAENPDVPLLERLKYLCIVSNNL 98

Query: 61  DEFFEVRIASLLAN-RIEGEHTDPPELRAALERTSAECHRIVARQYELLNEEILPQLAAN 119
           DE FEVRIASLLAN  +EGE  +PP L AAL    AECH+IV RQY +LNE +LPQLA  
Sbjct: 99  DELFEVRIASLLANNHMEGEFVEPPALSAALAVAGAECHQIVERQYRVLNESVLPQLAQE 158

Query: 120 GIHLLRHDDRNEAQRAWVKQYFEQHVRPLLTPIGLDPAHPFPQVHNKSLNFIIELSGKDA 179
           GIHLLR  DRNEAQRAWVK YF++ VRPLLTPIGLDPAHPFPQV NKSLNFI+ELSGKDA
Sbjct: 159 GIHLLRDQDRNEAQRAWVKAYFDREVRPLLTPIGLDPAHPFPQVVNKSLNFIVELSGKDA 218

Query: 180 FGRGTGIVIIKAPRVLPRVIKLPDHLSAKGQSSFCLLSSVIHAHIADLFPGRDIMAYSQF 239
           FGRGT I I+KAPRVLPRVI+LP  LS  G  SFCLLSS+IHAHI+DLF GR+++AYSQF
Sbjct: 219 FGRGTAIAILKAPRVLPRVIQLPPELSKNG-VSFCLLSSIIHAHISDLFSGREVLAYSQF 277

Query: 240 RVTRNSDLWVDEEEVKNLRQALETELQSRQFGVAVRLEVAANCPEHLSQFLLNQFNIEHN 299
           RVTRNSDLWVDEEEVKNLRQAL+ ELQSR FGVAVRLEVA NCP HLSQFLL QF+I+ N
Sbjct: 278 RVTRNSDLWVDEEEVKNLRQALQGELQSRNFGVAVRLEVAKNCPPHLSQFLLEQFSIDKN 337

Query: 300 RLYAVQGPVNMVRLGEIVNLVNQPELRFPPFSPTLPPQLASENIFDALDKKDVLLHHPFQ 359
           RLYAV GPVNMVRL E+++ V +PELRFPP+SP  P +LA+ ++F  + K DVLLHHPFQ
Sbjct: 338 RLYAVDGPVNMVRLSELIDHVTKPELRFPPYSPMYPAKLANTDLFGVIGKHDVLLHHPFQ 397

Query: 360 SFQPVVDFIRTAAHDPRVLAIKQTIYRTGMNSDLMEALIYAAQHGKEVTVIVELMARFDE 419
           SFQPV++FIR+AA DP V+AIKQTIYRTGMNSDLME+LI AAQ GKEVTV+VELMARFDE
Sbjct: 398 SFQPVLEFIRSAAQDPDVVAIKQTIYRTGMNSDLMESLIIAAQRGKEVTVVVELMARFDE 457

Query: 420 EANINWAVKLEQAGAQVVYGVVGLKTHAKLALVIRHDEDQGLRFYAHLGTGNYHPNTTKF 479
           EANINWA +LE+AGAQVVYGVVGLKTHAKLALVIR  E+  LR+YAH+GTGNYHP+TTKF
Sbjct: 458 EANINWADRLERAGAQVVYGVVGLKTHAKLALVIRR-ENGALRYYAHMGTGNYHPSTTKF 516

Query: 480 YTDFGLLTSNQQLTAEVNEVFIHLTSLTKPRNLTQLWLAPFSLQKEIIRAIRNEGQIARE 539
           YTDFGLLT+N  +  EVNEVFIHLTSLTKP+ L  LWLAPF+LQKE IRAIRNE +IAR 
Sbjct: 517 YTDFGLLTANPAIATEVNEVFIHLTSLTKPKKLDHLWLAPFALQKEFIRAIRNEAKIARL 576

Query: 540 GRPARIIAKMNALLDESVIRALYAASADGVKIDLIVRGACALRPGVPGLSDNIKVRSIIG 599
           GRP RIIAKMNALLDESVIRALYAASADGVKIDLIVRGACALRPGVPGLSDNI+VRSI+G
Sbjct: 577 GRPGRIIAKMNALLDESVIRALYAASADGVKIDLIVRGACALRPGVPGLSDNIRVRSIVG 636

Query: 600 RYLEHSRIYYFRNDLAHDVYLASADWMNRNLFRRIEVAFPVLDKALKKRVISEGLNPYLK 659
           R+LEHSRIYYFRNDLAHDVYL+SADWMNRNLFRRIEVAFP+LD ALKKRVI+EGL+PYLK
Sbjct: 637 RFLEHSRIYYFRNDLAHDVYLSSADWMNRNLFRRIEVAFPILDPALKKRVITEGLDPYLK 696

Query: 660 DNTNSWLLDVNGVYTLKKPRNKQQCFNAQQHLMSTLGIPV 699
           DN NSW LD NG+Y  +KPR K   F+AQQHLM  LG PV
Sbjct: 697 DNLNSWELDSNGIYQKRKPRGKSGAFSAQQHLMQVLGSPV 736


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,583,681
Number of extensions: 63577
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 614
Effective length of database: 888,291
Effective search space: 545410674
Effective search space used: 545410674
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)