BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1060.p
         (159 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981860|ref|YP_001353983.1| phosphohistidine phosphatase [J...   236   7e-64

>gi|152981860|ref|YP_001353983.1| phosphohistidine phosphatase
           [Janthinobacterium sp. Marseille]
          Length = 152

 Score =  236 bits (601), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 106/150 (70%), Positives = 130/150 (86%)

Query: 1   MDLILWRHAEAELGEPDEGRALTPKGHKQAAKMAEWLDRNLPESCRILVSPATRTLQTVE 60
           M+LILWRHAEAE+GEPDEGRALT KGHKQA KMAEWLD NLP SC+ILVSPATRT+QT E
Sbjct: 1   MELILWRHAEAEMGEPDEGRALTAKGHKQAWKMAEWLDHNLPNSCKILVSPATRTIQTAE 60

Query: 61  ALKRKYKVVADLAPNMSAADLLRAANWPDSREPVLIVGHQPTLGQVAAQLIAGQPQEWSL 120
           AL RK+K+V DLAP  +   +L A +WPDSREPVL++GHQPTLGQ+AA L+ G PQ+W++
Sbjct: 61  ALGRKFKIVEDLAPESNVEKILAATHWPDSREPVLVIGHQPTLGQLAATLVTGSPQDWTI 120

Query: 121 RKANVWWIAQRDRGDVTTNYLKAVIAPELL 150
           RK NVWWI QR+RG+++ NY++AV+AP+LL
Sbjct: 121 RKGNVWWIVQRERGEISGNYVRAVMAPDLL 150


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.131    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 396,073
Number of extensions: 15083
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 83
Effective length of database: 940,049
Effective search space: 78024067
Effective search space used: 78024067
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)