BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1059.p (586 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis pro... 427 e-120 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 379 e-106 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 374 e-105 gi|152981471|ref|YP_001352860.1| methyl-accepting chemotaxis pro... 372 e-104 gi|152981433|ref|YP_001351770.1| methyl-accepting chemotaxis pro... 371 e-104 >gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 427 bits (1097), Expect = e-120, Method: Compositional matrix adjust. Identities = 260/557 (46%), Positives = 361/557 (64%), Gaps = 16/557 (2%) Query: 3 FKNLSIRAQLAIAFLVLSILLLALGVSGLLGMSAAVSINRQLSEERLPKTVAADNMLIWV 62 F NLSI+ +L + I+L+ G G+ G+ + + + + +L + A + + + Sbjct: 2 FNNLSIKMRLIGTMAFMGIMLIVGGAMGVFGLQSTNNSLQDVYGNQLASSQAINTAITRL 61 Query: 63 GRQRTSLDQAAMSLDAAWTERMYGMEANARKEALQWWDKYTALPQTEEGKVLVKKVSDGI 122 + R+++D+ + + ++ R E+ W +Y ALP + K L +V+ Sbjct: 62 FQARSTIDRVLIKSSGSKNAEIFARADTLRNESDAAWKQYYALPMNADEKKLADEVT--- 118 Query: 123 AKTQVELDK----FTQAIKSG-ERQAIADQARKVGQAYSAMQLDGQALNKYETEQAVQSL 177 A L + +AI++G +A K + M + L +++ + A S Sbjct: 119 ANRDTYLREGALPLIKAIQAGLFEEAELLMLEKATPLFIKMTQSAEKLQEFQMKAAAASY 178 Query: 178 AASNARYEASRIFSISAIIVGLLLACFSWWSLRRAIGEPMQRALRHFDAIASGDLTQPVH 237 +S + + RI +I ++ GLL+ + + L RAI +P+ L HF AI++GDLT + Sbjct: 179 ESSQSMFSLFRIAAIGGVLFGLLVVAIAAFFLIRAIMQPLGEMLNHFSAISAGDLTSRIE 238 Query: 238 VHSSNEMGQLLQGLARMQESLSRTVRAVRGGSEAIATATREIASGNLDLSARTEQQAASL 297 V S NEMG+L+ GL MQ+SL TV VR GS AI AT++IA+GNLDLS+RTEQQA+SL Sbjct: 239 VKSRNEMGKLMGGLQVMQKSLIETVFNVRQGSTAIGVATQQIAAGNLDLSSRTEQQASSL 298 Query: 298 EETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNVVVGQVVQTMEQIRESSSRIT 357 EETASSMEELTSTVK NADNARQA LA +AST+A G VVV QVV TME+I S+ +I Sbjct: 299 EETASSMEELTSTVKQNADNARQANQLAASASTVAEKGGVVVSQVVDTMEEINTSAKKIV 358 Query: 358 DIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSGAAKEIKDLIM 417 DI+ +IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRS+ AAKEIK LI Sbjct: 359 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIG 418 Query: 418 HSVERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGIDQVSRAVTQMDE 477 SV++V+ GS+LV +AG TM +V+ VQ+VTDIMSEI+AAS EQSAGI+QV++A++QMD+ Sbjct: 419 DSVDKVEIGSKLVAEAGVTMKEVVHGVQQVTDIMSEITAASQEQSAGIEQVNQAISQMDQ 478 Query: 478 ATQQNAALVEQASAAAKSLQQQAQALMQEVAIFRVEPGAVEAAPVPPR-------AAAPR 530 TQQNAALVE+A+AAA+SL +QA L + V++F+++ G AAPV A++P Sbjct: 479 VTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLD-GVAAAAPVKKTASKIAAVASSPA 537 Query: 531 PVPKAVTPAKPVTPKAA 547 PV +A+ PV K A Sbjct: 538 PVKRAIAAPAPVRQKVA 554 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 379 bits (973), Expect = e-106, Method: Compositional matrix adjust. Identities = 264/606 (43%), Positives = 353/606 (58%), Gaps = 65/606 (10%) Query: 3 FKNLSIRAQLAIAFLVLSILLLALGVSGLLGMSAAVSINRQLSEERLPKTVAADNMLI-W 61 F N+ I A+L + F V+ L +A+ G+ + A +I R + E LP +A + M+ W Sbjct: 4 FSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLE--LP--IAKERMVSDW 59 Query: 62 VGRQRTSLDQA---AMSLDAAWTERMYGMEANARKEALQWWDKYTALPQTEEGKVLVKKV 118 + S+ + A S D A + A+ K++++ K L T++ K L K+ Sbjct: 60 AAITKASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAKI 119 Query: 119 SD----------GIAKTQVELDKFTQAIKSGERQAI--ADQARKVGQAYSAM---QLDGQ 163 D G+ K + E K +A K + + AD + + + Q+D Sbjct: 120 LDVRKSFLAGREGVMKLKTE-GKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAG 178 Query: 164 ALNKYETEQAVQSLAASNARYEASRIFSISAIIVGLLLACFSWWSLRRAIGEPMQRALRH 223 + E A ++ +SA++ L F W L I P++ A+ Sbjct: 179 TAQLSDVEAA-----------STRQLMLLSAMV--LAFGIFCAWRLTIGITRPLKTAVDA 225 Query: 224 FDAIASGDLTQPVHVHSSNEMGQLLQGLARMQESLSRTVRAVRGGSEAIATATREIASGN 283 +A GDLT + S +E GQLL L M + L R V VR G+E I TA+ EIA+GN Sbjct: 226 ARRVAGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGN 285 Query: 284 LDLSARTEQQAASLEETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNVVVGQVV 343 LDLS+RTEQQA+SLEETASSMEELTSTVK NADNARQA LAV+AS +A G VV QVV Sbjct: 286 LDLSSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVV 345 Query: 344 QTMEQIRESSSRITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQ 403 QTM I ESS +I DI+S+IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQ Sbjct: 346 QTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQ 405 Query: 404 RSSGAAKEIKDLIMHSVERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSA 463 RS+ AAKEIK LI SV +V G++LV +AG TM +++ +++RVTDIM EI+AAS EQSA Sbjct: 406 RSASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSA 465 Query: 464 GIDQVSRAVTQMDEATQQNAALVEQASAAAKSLQQQAQALMQEVAIFRVEPGAVEAAPVP 523 GI+Q+++A+ QMD TQQNA+LVE+A+AAA+S+Q QA+ L Q V F+++ A EA P Sbjct: 466 GIEQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLD-NAQEANP-- 522 Query: 524 PRAAAPRPVPKAVTPAKPVTPKAAPLTKRAALPAAPVTPPAAPAAKPASRAT---PVGDD 580 P+A+ +T+ A PAA A A P RA P GD Sbjct: 523 --------------------PRASGVTRLAPKPAAGSAGLAVAAPLPQRRANGALPAGD- 561 Query: 581 GDWETF 586 +WE F Sbjct: 562 -EWEQF 566 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 374 bits (960), Expect = e-105, Method: Compositional matrix adjust. Identities = 261/598 (43%), Positives = 357/598 (59%), Gaps = 43/598 (7%) Query: 1 MSFKNLSIRAQLAIAFLVLSILLLALGVSGLLGMS----AAVSINRQLSEERLPKTVAAD 56 M NL I +L +AF V+ +L+ ++ V G+ + A V + +ERL Sbjct: 1 MKISNLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQATVHMEEAAHKERLTHE---- 56 Query: 57 NMLIWVGRQRTSLDQAA-MSLDAAWTERMYGMEANAR-KEALQWWDKYTALPQTEEGKVL 114 ++G ++ AA + + A ++ + E + +E + ++ AL +EEGK L Sbjct: 57 ---WYLGNVANAIRTAARIRSNDAEIQKQFQKEMELQSQEISKLQNEIVALIHSEEGKKL 113 Query: 115 VKKVSDG-IAKTQVELDKFTQAIKSGERQAIADQARKVGQ-----AYSAMQLDGQALNKY 168 + V + A + D F +K+ A A K+ + A +A QA+ + Sbjct: 114 MSVVGEKRTAYMDIRKDVFK--LKAEANAAADLAATKLVETKMDPAMAAYNESVQAVVSF 171 Query: 169 ETEQAVQSLAASNARYEASRIFSISAIIVGLLLACFSWWSLRRAIGEPMQRALRHFDAIA 228 + ++ A +A Y + R I+ + L+L+ F W L R+I P+ A+ +A Sbjct: 172 QQVIFQRAKADVDALYASGRTILITLGSIALILSAFLAWLLSRSITRPLDYAVSVARTVA 231 Query: 229 SGDLTQPVHVHSSNEMGQLLQGLARMQESLSRTVRAVRGGSEAIATATREIASGNLDLSA 288 SGDL + S++E GQLL+ L M + L ++V VR G E IATA+ +IA+GNLDLS+ Sbjct: 232 SGDLRNKIQSSSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSS 291 Query: 289 RTEQQAASLEETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNVVVGQVVQTMEQ 348 RTE+QA+SLEETASSMEELTSTVK NADNARQA LAV+AS +A G VV +VV TMEQ Sbjct: 292 RTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQ 351 Query: 349 IRESSSRITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSGA 408 I S+ +I DI+ +IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRS+ A Sbjct: 352 INASAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAA 411 Query: 409 AKEIKDLIMHSVERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGIDQV 468 AKEIK LI SV++V+ GS+LVG+AG TM +V+Q+V+ VTDIMSEI AAS EQSAGI+QV Sbjct: 412 AKEIKTLIGDSVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQV 471 Query: 469 SRAVTQMDEATQQNAALVEQASAAAKSLQQQAQALMQEVAIFRVEPGAVEAAPVPPRAAA 528 ++A+ QMD+ TQQNAALVE+A+AAA+SL +QA L + V++F+++ AAP Sbjct: 472 NQAIGQMDQVTQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKLDSITAAAAP------- 524 Query: 529 PRPVPKAVTPAKPVTPKAAPLTKRAALPAAPVTPPAAPAAKPASRATPVGDDGDWETF 586 K V V AP + A P K S G D DWE F Sbjct: 525 ----SKKVNVGTRVASHGAPANR----------AIAVPVTKKISNGAATGGD-DWEEF 567 >gi|152981471|ref|YP_001352860.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 372 bits (955), Expect = e-104, Method: Compositional matrix adjust. Identities = 229/407 (56%), Positives = 285/407 (70%), Gaps = 20/407 (4%) Query: 182 ARYEASRIFSISAIIVGLLLACFSWWSLRRAIGEPMQRALRHFDAIASGDLTQPVHVHSS 241 A Y + R+ I ++ LLL W L I P+Q AL +++A GDLT + ++ Sbjct: 183 ADYASGRMTLIIGAVIALLLGALIAWRLTVGITRPLQEALSVAESVAEGDLTARSTMPAA 242 Query: 242 N-EMGQLLQGLARMQESLSRTVRAVRGGSEAIATATREIASGNLDLSARTEQQAASLEET 300 N E G LL+ L RMQ+SL++TV +R G++ IATA+ EIASGNLDLS+RTEQQA+SLEET Sbjct: 243 NDEAGLLLKALRRMQDSLAKTVTQIRMGTDTIATASSEIASGNLDLSSRTEQQASSLEET 302 Query: 301 ASSMEELTSTVKHNADNARQATTLAVNASTIAADGNVVVGQVVQTMEQIRESSSRITDIV 360 ASSMEELTSTVK NADN+RQA LAV AS +A G VV +VV TM I ES+ +I DI+ Sbjct: 303 ASSMEELTSTVKQNADNSRQANQLAVAASAVAVKGGSVVSEVVNTMGSINESAKKIVDII 362 Query: 361 SIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSGAAKEIKDLIMHSV 420 +IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR LAQRS+ AAKEIK LI SV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKALIGDSV 422 Query: 421 ERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGIDQVSRAVTQMDEATQ 480 E+V AGS+LV +AG TM +++ V+RV DIM+EI+AAS EQS GI+QV++A+ QMD+ TQ Sbjct: 423 EKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAIGQMDQVTQ 482 Query: 481 QNAALVEQASAAAKSLQQQAQALMQEVAIFRVEPGAVEAAPVPPRAAAPRPV-PKAVTPA 539 QNAALVE+A+AAA+SLQ QA+ L Q V++F++ G + P AAPR V AV Sbjct: 483 QNAALVEEAAAAAESLQDQAKNLAQAVSVFQIGSGYASSQP-----AAPRTVQSTAVRAP 537 Query: 540 KPVTPKAAPLTKRAALPAAPVTPPAAPAAKPASRATPVGDDGDWETF 586 PV + RA PA T P S+AT G++ DWE F Sbjct: 538 APVVAAS-----RAPAPAIKKTTP--------SKATVQGNNDDWEEF 571 >gi|152981433|ref|YP_001351770.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 371 bits (952), Expect = e-104, Method: Compositional matrix adjust. Identities = 276/575 (48%), Positives = 360/575 (62%), Gaps = 41/575 (7%) Query: 3 FKNLSIRAQLAIAFLVLSILLLALGVSGLLGMSAAVSINRQLSEERLPKTVAADNMLIWV 62 KNL+I++ L +LS+LL+ G+ GL +SA + + E+R TVA + Sbjct: 2 LKNLTIKSLLLSVMSILSVLLVGTGILGLSSLSATNDALKTVYEDR---TVA-------L 51 Query: 63 GRQRTSLDQAAMS-LDAAWTERMYG--------MEANAR--KEALQWWDKYTALPQTEEG 111 G T + ++ LD A + +YG M+A + K + Y T E Sbjct: 52 GELNTVITLLTINQLDLAAS--IYGDPNLVLPKMDAIEKRTKTIASTFGAYEQTQLTTEE 109 Query: 112 KVLVKKVSDGIAKTQVELDK-FTQAIKSGERQAIADQARKVGQAYSAMQL----DGQALN 166 K L K S K +DK AI + + V + + L D +L Sbjct: 110 KALAGKFSADYKKF---VDKALVPAIAASRGGNVLRVTEIVNETMEGLILPVRADVTSLI 166 Query: 167 KYETEQAVQSLAASNARYEASRIFSISAIIVGLLLACFSWWSLRRAIGEPMQRALRHFDA 226 + ++A + AS AR+ R SI+AII G+L+A F + L R I P++ A+ + Sbjct: 167 DIQLQEAKREFEASQARFTLVRNISIAAIIFGVLIAAFMAFWLLRLIVRPLREAVDVARS 226 Query: 227 IASGDLTQPVHVHSSNEMGQLLQGLARMQESLSRTVRAVRGGSEAIATATREIASGNLDL 286 +A+GDLTQ + V SSNE GQLLQ + M +SL++TV AVR G+E I A+ EIASGN DL Sbjct: 227 VAAGDLTQQIQVRSSNETGQLLQAIKDMNDSLAQTVSAVRHGTETITLASGEIASGNADL 286 Query: 287 SARTEQQAASLEETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNVVVGQVVQTM 346 S+RTE QA SLEETASSMEELTSTV+ NADNARQA LA +AS +A G VVV +VVQTM Sbjct: 287 SSRTEAQAGSLEETASSMEELTSTVRQNADNARQANQLAASASEVAVKGGVVVAEVVQTM 346 Query: 347 EQIRESSSRITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSS 406 I++SS +I DI+ +IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR LAQRS+ Sbjct: 347 GSIQDSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRNLAQRSA 406 Query: 407 GAAKEIKDLIMHSVERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGID 466 AAKEIK LI SV++V+AGS V QAG TM +++ +V+RVTDIM+EI+AAS EQ++GI+ Sbjct: 407 AAAKEIKVLIGDSVDKVEAGSNQVTQAGKTMDEIVSSVRRVTDIMAEITAASQEQTSGIE 466 Query: 467 QVSRAVTQMDEATQQNAALVEQASAAAKSLQQQAQALMQEVAIFR---VEPGAVE----- 518 Q+++A+TQMDE TQQNAALVEQA+AAA SLQQQA L Q V +F+ VE V Sbjct: 467 QINQAITQMDEMTQQNAALVEQAAAAAASLQQQANGLSQVVGVFKLSGVEQNLVRDLHSY 526 Query: 519 AAPVPPRAAAPRPVPKAV-TPAKPVTPKAAPLTKR 552 A VPP+ + R PKA+ T A P+ A T+R Sbjct: 527 TAEVPPQVES-RSAPKALATQAASPKPQKAMSTER 560 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.313 0.124 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 855,409 Number of extensions: 28393 Number of successful extensions: 239 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 21 Length of query: 586 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 498 Effective length of database: 895,685 Effective search space: 446051130 Effective search space used: 446051130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)