BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1058.p (552 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 408 e-115 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 394 e-111 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 392 e-110 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 389 e-109 gi|152981471|ref|YP_001352860.1| methyl-accepting chemotaxis pro... 388 e-109 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 408 bits (1049), Expect = e-115, Method: Compositional matrix adjust. Identities = 271/563 (48%), Positives = 344/563 (61%), Gaps = 41/563 (7%) Query: 2 MQHLKIGSRLAFGFFLILALATAILVIGLWRMAELEASNEYLIEKKVTAMTAALNMREAG 61 + +LKIG RL F +IL L +++V+G+WR+ ++ + ++ E A L Sbjct: 3 ISNLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQATVHMEE---AAHKERLTHEWYL 59 Query: 62 SALALALRKVVTPTDAAEGKTEDAHLGKILQAYAGYEKQLTDLSPGGRGKELL-LATSGE 120 +A A+R AA ++ DA + K Q E +L E++ L S E Sbjct: 60 GNVANAIRT------AARIRSNDAEIQKQFQ----KEMELQSQEISKLQNEIVALIHSEE 109 Query: 121 GKKLFPLVGQIRQQVGSNNYFD-------------------AAQQLKSDFLPAHEKWMSS 161 GKKL +VG+ R Y D A + +++ PA + S Sbjct: 110 GKKLMSVVGEKR-----TAYMDIRKDVFKLKAEANAAADLAATKLVETKMDPAMAAYNES 164 Query: 162 VAALASFQQEDMQQAHAQARDSYRKAQIGMLAMGVLTLGLGCFFTFVITRSIVTPLKRAG 221 V A+ SFQQ Q+A A Y + ++ +G + L L F ++++RSI PL A Sbjct: 165 VQAVVSFQQVIFQRAKADVDALYASGRTILITLGSIALILSAFLAWLLSRSITRPLDYAV 224 Query: 222 QIAETISRGDLTQHAQAQGHDEAAHLVNTLDAMQANLAATLNEVKQSAAVIAVASHEIAR 281 +A T++ GDL Q+ +DE L+ L M L ++++V+ IA AS++IA Sbjct: 225 SVARTVASGDLRNKIQSSSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAA 284 Query: 282 GNVDLSNRTESQASSLEETASSMEQLTSTVQQNAANAQQANQLVLSASDHATKGGRVVGD 341 GN+DLS+RTE QASSLEETASSME+LTSTV+QNA NA+QANQL +SAS A KGG VV Sbjct: 285 GNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSR 344 Query: 342 VVTTMGSIKESSGKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRAL 401 VV TM I S+ KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR L Sbjct: 345 VVDTMEQINASAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNL 404 Query: 402 AQRSAAAAKEIKQLISDSVDKVDTGGKLVDEAGATMSEIVASVKQVADIMGEITAASQEQ 461 AQRSAAAAKEIK LI DSVDKV+ G KLV EAG TM E+V SVK V DIM EI AASQEQ Sbjct: 405 AQRSAAAAKEIKTLIGDSVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQ 464 Query: 462 SAGIAEVNHAITQIDEITQQNAALVEQAAAAAVSLQEQADVLAQAVAVFKLKTVLQVPTV 521 SAGI +VN AI Q+D++TQQNAALVE+AAAAA SL EQA LA+AV+VFKL + + Sbjct: 465 SAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKLDS---ITAA 521 Query: 522 PVPLRSVNAPPAVTAAAKPARLA 544 P + VN V + PA A Sbjct: 522 AAPSKKVNVGTRVASHGAPANRA 544 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 394 bits (1013), Expect = e-111, Method: Compositional matrix adjust. Identities = 249/539 (46%), Positives = 333/539 (61%), Gaps = 8/539 (1%) Query: 2 MQHLKIGSRLAFGFFLILALATAILVIGLWRMAELEASNEYLIEKKVTAMTAALNMREAG 61 M++LKIG RL+ F ++ L + + R+ L + + + A M++ Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 62 SALALALRKVVTPTDAAEGKTEDAHLGKILQAYAGYEKQLTDLSPGGRGKELLLATSGEG 121 + +A +R + T+ A + E +GK + +L RG++ + + Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADR 120 Query: 122 KKLFPLVGQIRQQVGSNNYFDAAQQLKSDFLPAHEKWMSSVAALASFQQEDMQQAHAQAR 181 K PL + + +A L ++ PA +++S+ L +Q E M+++ A+A Sbjct: 121 SKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEAN 180 Query: 182 DSYRKAQIGMLAMGVLTLGLGCFFTFVITRSIVTPLKRAGQIAETISRGDLTQHAQAQGH 241 + Q+ + ++ + + F + TRSI PL +A +A ++ GDLT + Sbjct: 181 AKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESK 240 Query: 242 DEAAHLVNTLDAMQANLAATLNEVKQSAAVIAVASHEIARGNVDLSNRTESQASSLEETA 301 DE L+ L M L + +V+ IA ASH+IA GN+DLS+RTE QASSLEETA Sbjct: 241 DETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETA 300 Query: 302 SSMEQLTSTVQQNAANAQQANQLVLSASDHATKGGRVVGDVVTTMGSIKESSGKIVDIIG 361 SSME+LTSTV+QNA NA+Q+NQL LSAS+ A +GG VV VV TMG I +S+ KIVDIIG Sbjct: 301 SSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIG 360 Query: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLISDSVD 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK+LI DSVD Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVD 420 Query: 422 KVDTGGKLVDEAGATMSEIVASVKQVADIMGEITAASQEQSAGIAEVNHAITQIDEITQQ 481 KV G +LVD+AGATM E+V SVK+V DIM EITAASQEQ+ GI ++N A+ Q+D++TQQ Sbjct: 421 KVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQ 480 Query: 482 NAALVEQAAAAAVSLQEQADVLAQAVAVFKLKTVLQVPTVPVPLRSVNAPPAVTAAAKP 540 NAALVE+AAAAA SLQ QA L+Q V VFKL TV VNA P TA +P Sbjct: 481 NAALVEEAAAAAESLQGQASHLSQVVGVFKLDG--HGTTV------VNAVPTYTAPEQP 531 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 392 bits (1007), Expect = e-110, Method: Compositional matrix adjust. Identities = 274/571 (47%), Positives = 353/571 (61%), Gaps = 65/571 (11%) Query: 4 HLKIGSRLAFGFFLILALATAILVIGLWRMAELEASNEYLIEKKVTAMTAA---LNMREA 60 +LKI +RL+FGF L+L L + V+G+ R+ E+ S + + + + A L+ + Sbjct: 5 NLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLSAVDV 64 Query: 61 GSALALALRKVVTPTDAAEGKTEDAHLGKILQAYAGYEKQLTDLSPGGRGKEL-----LL 115 A LA K + D QA+ ++KQ+ S R EL + Sbjct: 65 NGARTLASAKTTSAED---------------QAF--FQKQMDKTSV--RANELQKEIESM 105 Query: 116 ATSGEGKKLFP-LVGQIRQQVGSNNYFDAAQ---QLKSD-------------FLPAHEKW 158 + E K+LF LV V N Y D Q +LK++ LPA + Sbjct: 106 IKTPEDKRLFEELV------VARNAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAY 159 Query: 159 MSSVAALASFQQEDMQQAHAQARDSY---RKAQIGMLAMGVLTLGLGCFFTFVITRSIVT 215 +S+ A+ +++ + +A + ++ R IG+LA V LG FF + + SI Sbjct: 160 SNSIDAVLQNEKKLIDEAGTSIQSAFLSGRSLLIGLLAAAV---ALGVFFAWRLAISITR 216 Query: 216 PLKRAGQIAETISRGDLTQHAQAQGHDEAAHLVNTLDAMQANLAATLNEVKQSAAVIAVA 275 PL RA +A T++ GDL+ + +DE L+ L M +L T++EV+ IA A Sbjct: 217 PLNRAVTVARTVASGDLSAKIEVSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATA 276 Query: 276 SHEIARGNVDLSNRTESQASSLEETASSMEQLTSTVQQNAANAQQANQLVLSASDHATKG 335 S +IA GN+DLS+RTE QASSL ETA+SM QLTSTV+QNA NA+QAN L +SASD A KG Sbjct: 277 SRQIASGNLDLSSRTEEQASSLGETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKG 336 Query: 336 GRVVGDVVTTMGSIKESSGKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 395 G VV +VV TM SI ES+ KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 337 GSVVSEVVDTMASINESARKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 396 Query: 396 SEVRALAQRSAAAAKEIKQLISDSVDKVDTGGKLVDEAGATMSEIVASVKQVADIMGEIT 455 SEVR LAQRSAAAAKEIK LI DSV KV+ G KLV+EAG+TM+EIV SVK+V DIM EI Sbjct: 397 SEVRNLAQRSAAAAKEIKILIGDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIM 456 Query: 456 AASQEQSAGIAEVNHAITQIDEITQQNAALVEQAAAAAVSLQEQADVLAQAVAVFKLK-- 513 AASQEQS+GI +VN AI Q+D++TQQNAALVE+AAAAA SLQ+QA LA+ V+ FKL Sbjct: 457 AASQEQSSGIDQVNQAIGQMDQVTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKLDGN 516 Query: 514 ---TVLQVPTVPVPLRSVNAPPAV-TAAAKP 540 V + +PV +R N PA+ T AAKP Sbjct: 517 QPAFVSSLDDIPV-VR--NTTPAIRTQAAKP 544 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 389 bits (1000), Expect = e-109, Method: Compositional matrix adjust. Identities = 249/528 (47%), Positives = 321/528 (60%), Gaps = 32/528 (6%) Query: 1 MMQHLKIGSRLAFGFFLILALATAILVIGLWRMAELEASNEYLIEKKVTAMTAALNMREA 60 ++KIG+RL GF ++LAL+ AI G+ ++ + A ++E + +E Sbjct: 3 FFSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIA--------KER 54 Query: 61 GSALALALRKVVTPTDAAEGKTEDAHLGKILQAYAGYEKQ-----LTDLSPGGRGKELLL 115 + A+ K K+ D L + +A + + + L P LL Sbjct: 55 MVSDWAAITKASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEP-------LL 107 Query: 116 ATSGEGKKLFPLVGQIRQQV--GSNNYF---------DAAQQLKSDFLPAHEKWMSSVAA 164 T E K+L+ + +R+ G +AA+ + FLPA + + + Sbjct: 108 NTDQE-KELYAKILDVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTE 166 Query: 165 LASFQQEDMQQAHAQARDSYRKAQIGMLAMGVLTLGLGCFFTFVITRSIVTPLKRAGQIA 224 +++ M AQ D + ++ + + L G F + +T I PLK A A Sbjct: 167 FVELERKQMDAGTAQLSDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAA 226 Query: 225 ETISRGDLTQHAQAQGHDEAAHLVNTLDAMQANLAATLNEVKQSAAVIAVASHEIARGNV 284 ++ GDLT +A+ DE L+ L M L + EV+ I AS+EIA GN+ Sbjct: 227 RRVAGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNL 286 Query: 285 DLSNRTESQASSLEETASSMEQLTSTVQQNAANAQQANQLVLSASDHATKGGRVVGDVVT 344 DLS+RTE QASSLEETASSME+LTSTV+QNA NA+QANQL +SAS+ A KGG VV VV Sbjct: 287 DLSSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQ 346 Query: 345 TMGSIKESSGKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQR 404 TM SI ESS KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQR Sbjct: 347 TMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQR 406 Query: 405 SAAAAKEIKQLISDSVDKVDTGGKLVDEAGATMSEIVASVKQVADIMGEITAASQEQSAG 464 SA+AAKEIK LI DSV KVDTG KLV EAGATM EIV S+++V DIMGEITAASQEQSAG Sbjct: 407 SASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAG 466 Query: 465 IAEVNHAITQIDEITQQNAALVEQAAAAAVSLQEQADVLAQAVAVFKL 512 I ++N AI Q+D +TQQNA+LVE+AAAAA S+Q+QA L Q V FKL Sbjct: 467 IEQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKL 514 >gi|152981471|ref|YP_001352860.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 388 bits (996), Expect = e-109, Method: Compositional matrix adjust. Identities = 278/579 (48%), Positives = 364/579 (62%), Gaps = 42/579 (7%) Query: 4 HLKIGSRLAFGFFLILALATAILVIGLWRMAELEASNEYLIEKKVTAMTAALNMREAGSA 63 ++KIG RL GF LIL L A+ G+ R+ + ++ L+++ + AA + Sbjct: 5 NMKIGVRLGLGFGLILLLVAAMGATGIMRLENINNASRNLVDQSLKKQKAAEDW-----L 59 Query: 64 LALALRKVVTPTDAAEGKTEDAHLGKILQ-AYAGYEKQLTDLSPGGRGKELLLATSGEGK 122 LA ++ V T A K+ D + Q A KQ+TD+ G E L T E K Sbjct: 60 LATSVNGVRT---VALVKSADPETQQFFQKAITAQSKQITDIQ---NGVEASLVTPEE-K 112 Query: 123 KLFPLVGQ-------IRQQV----GSNNYFDAAQQLKSDFLPAHEKWMSSVAALASFQQE 171 +LF VG+ +R+ + N +A Q + S +PA + ++ SV + + Q Sbjct: 113 QLFAEVGKKRAVYVDLRKAIFAVKEKGNEAEAKQLIDSKMIPALDAYVESVREVLAHYQN 172 Query: 172 DMQQAHAQARDSYRKAQIGMLAMGVLTLGLGCFFTFVITRSIVTPLKRAGQIAETISRGD 231 +++ A Y ++ ++ V+ L LG + +T I PL+ A +AE+++ GD Sbjct: 173 EVKLADQSITADYASGRMTLIIGAVIALLLGALIAWRLTVGITRPLQEALSVAESVAEGD 232 Query: 232 LT-QHAQAQGHDEAAHLVNTLDAMQANLAATLNEVKQSAAVIAVASHEIARGNVDLSNRT 290 LT + +DEA L+ L MQ +LA T+ +++ IA AS EIA GN+DLS+RT Sbjct: 233 LTARSTMPAANDEAGLLLKALRRMQDSLAKTVTQIRMGTDTIATASSEIASGNLDLSSRT 292 Query: 291 ESQASSLEETASSMEQLTSTVQQNAANAQQANQLVLSASDHATKGGRVVGDVVTTMGSIK 350 E QASSLEETASSME+LTSTV+QNA N++QANQL ++AS A KGG VV +VV TMGSI Sbjct: 293 EQQASSLEETASSMEELTSTVKQNADNSRQANQLAVAASAVAVKGGSVVSEVVNTMGSIN 352 Query: 351 ESSGKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAK 410 ES+ KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSAAAAK Sbjct: 353 ESAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAK 412 Query: 411 EIKQLISDSVDKVDTGGKLVDEAGATMSEIVASVKQVADIMGEITAASQEQSAGIAEVNH 470 EIK LI DSV+KVD G KLV EAG TM EIV VK+VADIM EITAASQEQS GI +VN Sbjct: 413 EIKALIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQ 472 Query: 471 AITQIDEITQQNAALVEQAAAAAVSLQEQADVLAQAVAVFKLKT--VLQVPTVPVPLRS- 527 AI Q+D++TQQNAALVE+AAAAA SLQ+QA LAQAV+VF++ + P P ++S Sbjct: 473 AIGQMDQVTQQNAALVEEAAAAAESLQDQAKNLAQAVSVFQIGSGYASSQPAAPRTVQST 532 Query: 528 -VNAP-PAVTAAAKPARLAR------------DEEFEEF 552 V AP P V A+ PA + ++++EEF Sbjct: 533 AVRAPAPVVAASRAPAPAIKKTTPSKATVQGNNDDWEEF 571 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.126 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 855,199 Number of extensions: 30041 Number of successful extensions: 230 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 21 Length of query: 552 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 464 Effective length of database: 895,685 Effective search space: 415597840 Effective search space used: 415597840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)