BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1057.p (674 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 360 e-100 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 355 5e-99 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 349 3e-97 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 348 5e-97 gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 346 3e-96 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 360 bits (925), Expect = e-100, Method: Compositional matrix adjust. Identities = 224/386 (58%), Positives = 266/386 (68%), Gaps = 13/386 (3%) Query: 273 EMSFSP--DDYFKRFTAAIDEQFKATRAVTEALAAQLDAQNADLRRQQLSVLGAVLLLAA 330 + +F P D + FT ++ + K A T AQL A RQ + + VL Sbjct: 150 DTTFLPAADSFKNHFTEFVELERKQMDAGT----AQLSDVEAASTRQLMLLSAMVLAFGI 205 Query: 331 LVAW-LGVMITRSVSVPVQASVAMAGRVANYDLTARATVQGRDESAQLLGSLNDMTHSLG 389 AW L + ITR P++ +V A RVA DLT + +DE QLL +L DM L Sbjct: 206 FCAWRLTIGITR----PLKTAVDAARRVAGGDLTNDIKAESKDECGQLLAALKDMNDGLQ 261 Query: 390 GIVGRVRTSIEVIQHASREIATGNADLSRRTESQASSLEETASAMEQLTSTVQNNAHSAR 449 IVG VR E I AS EIA GN DLS RTE QASSLEETAS+ME+LTSTV+ NA +AR Sbjct: 262 RIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLEETASSMEELTSTVKQNADNAR 321 Query: 450 QADQLASSASQLAERGGQVVGNVVDTMAQIRDSSRRIVDIISVIDGIAFQTNILALNAAV 509 QA+QLA SAS++A +GG VV VV TM+ I +SSR+IVDIISVIDGIAFQTNILALNAAV Sbjct: 322 QANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVDIISVIDGIAFQTNILALNAAV 381 Query: 510 EAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKQLISDSVERVETGGQLVDEAGATMHE 569 EAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIK LI DSV +V+TG +LV EAGATM E Sbjct: 382 EAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDE 441 Query: 570 IVGSVRQVAGIMSEITQASEEQSNGISQVNDAIAQMEGITQQNAALVEEAAAAAESLQQQ 629 IV S+R+V IM EIT AS+EQS GI Q+N AI QM+ +TQQNA+LVEEAAAAAES+Q Q Sbjct: 442 IVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQ 501 Query: 630 AELLWDAVSVFRIQEDAAHQPRQPQA 655 A L V F++ D A + P+A Sbjct: 502 ARKLGQVVGAFKL--DNAQEANPPRA 525 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 355 bits (911), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 207/333 (62%), Positives = 258/333 (77%), Gaps = 2/333 (0%) Query: 311 NADLRRQQLSVLGAVLLLAALVA-WLGVMITRSVSVPVQASVAMAGRVANYDLTARATVQ 369 NA + QL ++G ++A L+A V+ TRS++ P+ +V +A +VA+ DLT V+ Sbjct: 180 NAKASQTQL-LIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVE 238 Query: 370 GRDESAQLLGSLNDMTHSLGGIVGRVRTSIEVIQHASREIATGNADLSRRTESQASSLEE 429 +DE+ QLL +L DM L IV +VR + I AS +IATGN DLS RTE QASSLEE Sbjct: 239 SKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEE 298 Query: 430 TASAMEQLTSTVQNNAHSARQADQLASSASQLAERGGQVVGNVVDTMAQIRDSSRRIVDI 489 TAS+ME+LTSTV+ NA +ARQ++QLA SAS++A RGG VV VVDTM +I DS+++IVDI Sbjct: 299 TASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDI 358 Query: 490 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKQLISDS 549 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK+LI DS Sbjct: 359 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDS 418 Query: 550 VERVETGGQLVDEAGATMHEIVGSVRQVAGIMSEITQASEEQSNGISQVNDAIAQMEGIT 609 V++V G +LVD+AGATM E+V SV++V IMSEIT AS+EQ++GI Q+N A+ QM+ +T Sbjct: 419 VDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVT 478 Query: 610 QQNAALVEEAAAAAESLQQQAELLWDAVSVFRI 642 QQNAALVEEAAAAAESLQ QA L V VF++ Sbjct: 479 QQNAALVEEAAAAAESLQGQASHLSQVVGVFKL 511 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 349 bits (896), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 210/328 (64%), Positives = 253/328 (77%), Gaps = 4/328 (1%) Query: 316 RQQLSVLGAV-LLLAALVAWLGVMITRSVSVPVQASVAMAGRVANYDLTARATVQGRDES 374 R L LG++ L+L+A +AWL ++RS++ P+ +V++A VA+ DL + DE+ Sbjct: 191 RTILITLGSIALILSAFLAWL---LSRSITRPLDYAVSVARTVASGDLRNKIQSSSNDET 247 Query: 375 AQLLGSLNDMTHSLGGIVGRVRTSIEVIQHASREIATGNADLSRRTESQASSLEETASAM 434 QLL +L DM L V +VRT IE I AS +IA GN DLS RTE QASSLEETAS+M Sbjct: 248 GQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTEEQASSLEETASSM 307 Query: 435 EQLTSTVQNNAHSARQADQLASSASQLAERGGQVVGNVVDTMAQIRDSSRRIVDIISVID 494 E+LTSTV+ NA +ARQA+QLA SAS +AE+GG+VV VVDTM QI S+++IVDII VID Sbjct: 308 EELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQINASAKKIVDIIGVID 367 Query: 495 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKQLISDSVERVE 554 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK LI DSV++VE Sbjct: 368 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVE 427 Query: 555 TGGQLVDEAGATMHEIVGSVRQVAGIMSEITQASEEQSNGISQVNDAIAQMEGITQQNAA 614 G +LV EAG TM E+V SV+ V IMSEI AS+EQS GI QVN AI QM+ +TQQNAA Sbjct: 428 LGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAA 487 Query: 615 LVEEAAAAAESLQQQAELLWDAVSVFRI 642 LVEEAAAAAESL +QA L +AVSVF++ Sbjct: 488 LVEEAAAAAESLNEQAAKLAEAVSVFKL 515 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 348 bits (894), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 207/340 (60%), Positives = 257/340 (75%), Gaps = 3/340 (0%) Query: 308 DAQNADLRRQQLSVLGAVLLLAALV-AWLGVMITRSVSVPVQASVAMAGRVANYDLTARA 366 DA QQL +G + ++A ++ A+LG + TRS++ P+ +V +A +VA+ DLT Sbjct: 178 DAHEVSANAQQL--VGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTI 235 Query: 367 TVQGRDESAQLLGSLNDMTHSLGGIVGRVRTSIEVIQHASREIATGNADLSRRTESQASS 426 V +DE+ QLL +L DM + L IV +VR + I AS +IATGN DLS RTE QASS Sbjct: 236 VVTSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASS 295 Query: 427 LEETASAMEQLTSTVQNNAHSARQADQLASSASQLAERGGQVVGNVVDTMAQIRDSSRRI 486 LEETAS+ME+LTSTV+ NA +ARQ++QLA +AS++A RGG VV VV+TM I DS+ +I Sbjct: 296 LEETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKI 355 Query: 487 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKQLI 546 VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK LI Sbjct: 356 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLI 415 Query: 547 SDSVERVETGGQLVDEAGATMHEIVGSVRQVAGIMSEITQASEEQSNGISQVNDAIAQME 606 DSVE+V G +LV +AG TM E+V SVR+V IM EIT AS+EQ++GI Q+N A+ QM+ Sbjct: 416 DDSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMD 475 Query: 607 GITQQNAALVEEAAAAAESLQQQAELLWDAVSVFRIQEDA 646 +TQQNAALVEEAAAAAESLQ QA L VSVF++ +A Sbjct: 476 QVTQQNAALVEEAAAAAESLQDQANNLSQVVSVFKLDANA 515 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 346 bits (887), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 201/315 (63%), Positives = 246/315 (78%) Query: 335 LGVMITRSVSVPVQASVAMAGRVANYDLTARATVQGRDESAQLLGSLNDMTHSLGGIVGR 394 LG++I+RS++ P+ +V +A VA+ DLT++ V+ +DE+ QLL +L DM SL GIV Sbjct: 202 LGIVISRSITRPLNEAVLVAQTVASGDLTSQINVKSKDETGQLLQALKDMNQSLIGIVDE 261 Query: 395 VRTSIEVIQHASREIATGNADLSRRTESQASSLEETASAMEQLTSTVQNNAHSARQADQL 454 VR+ + AS +IA+GN DLS RTE QASSLEETAS+ME+LTSTV+ NA +ARQA+ L Sbjct: 262 VRSGTATMATASNQIASGNMDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANSL 321 Query: 455 ASSASQLAERGGQVVGNVVDTMAQIRDSSRRIVDIISVIDGIAFQTNILALNAAVEAARA 514 + SAS++A +GGQVV VV TM I DS+++I DII VIDGIAFQTNILALNAAVEAARA Sbjct: 322 SLSASEIAVKGGQVVSEVVVTMNGINDSAKKITDIIGVIDGIAFQTNILALNAAVEAARA 381 Query: 515 GEQGRGFAVVASEVRSLAQRSAGAAKEIKQLISDSVERVETGGQLVDEAGATMHEIVGSV 574 GEQGRGFAVVASEVR+LAQRSA AAKEIK LI DSV RV+TG +LV +AG+TM E+V SV Sbjct: 382 GEQGRGFAVVASEVRNLAQRSAAAAKEIKALIDDSVGRVDTGSKLVVQAGSTMTEVVDSV 441 Query: 575 RQVAGIMSEITQASEEQSNGISQVNDAIAQMEGITQQNAALVEEAAAAAESLQQQAELLW 634 ++V IM+EI AS+EQS GI QVN AIAQM+ +TQQNAALVEEAAAAA SL+ QA L Sbjct: 442 KRVTDIMAEIMAASQEQSAGIEQVNQAIAQMDHVTQQNAALVEEAAAAAGSLKDQAVKLE 501 Query: 635 DAVSVFRIQEDAAHQ 649 VSVF+I A Q Sbjct: 502 QTVSVFKIDASAPQQ 516 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.127 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,090,664 Number of extensions: 36313 Number of successful extensions: 277 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 203 Number of HSP's successfully gapped: 21 Length of query: 674 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 584 Effective length of database: 888,291 Effective search space: 518761944 Effective search space used: 518761944 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)