BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1055.p
         (296 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980846|ref|YP_001353988.1| hypothetical protein mma_2298 [...   474   e-135

>gi|152980846|ref|YP_001353988.1| hypothetical protein mma_2298
           [Janthinobacterium sp. Marseille]
          Length = 286

 Score =  474 bits (1221), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 226/296 (76%), Positives = 259/296 (87%), Gaps = 10/296 (3%)

Query: 1   MKPREQFMEKAQGLFADLGAEGDQHDDESKRDPLRFRTIWISDIHLGTTGCQAERLLEFL 60
           MKPR+QF+     + A++GA         KR+P+RFRTIWISD+HLGTTGCQA+RLLEFL
Sbjct: 1   MKPRDQFL-TTDFIGAEVGA---------KREPVRFRTIWISDLHLGTTGCQAQRLLEFL 50

Query: 61  RATESETLYLVGDIIDGWQLKRRWYWDQSHNNVVQTVLKKAKKGTNVIFVPGNHDEVIRQ 120
           R TESETLYLVGDIIDGWQLKRRWYW+Q+HN+VVQTVLKKAKKGT VIFVPGNHDE +RQ
Sbjct: 51  RKTESETLYLVGDIIDGWQLKRRWYWEQAHNDVVQTVLKKAKKGTEVIFVPGNHDEAVRQ 110

Query: 121 FIDLDFGGIKIRDELVHVTAEGKRMLVLHGDRFDGVIACAKWLAYVGDSLYTMILKFNQW 180
           FIDLDFGGI+IRDEL+H TA+GKRMLVLHGDRFDGVIACAKWLAYVGD+LYT+ILKFNQW
Sbjct: 111 FIDLDFGGIRIRDELIHTTAQGKRMLVLHGDRFDGVIACAKWLAYVGDNLYTVILKFNQW 170

Query: 181 FNSWRARAGLPYWSLSQYLKSKVKNAVNYITSFEDALAEEAKKKGLDGVICGHIHKPEIR 240
           FN WRARAGLPYWSLSQYLK KVKNAV+YI+SFE+ALA EAK++GLDGVICGHIHKPEIR
Sbjct: 171 FNGWRARAGLPYWSLSQYLKLKVKNAVSYISSFENALAAEAKRRGLDGVICGHIHKPEIR 230

Query: 241 DIGGVVYCNDGDWVESLSALVEEPNGELRLVSWQEIMQLKRAGKEARQAARELAPA 296
           DI G+ YCNDGDWVESLSALVE+ +G LRLV+WQEI+   +A K  +     ++P+
Sbjct: 231 DIDGITYCNDGDWVESLSALVEDASGALRLVTWQEIVMSHQAAKHEKGEELCVSPS 286


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 721,892
Number of extensions: 29223
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 213
Effective length of database: 914,170
Effective search space: 194718210
Effective search space used: 194718210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)