BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1053.p (260 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase... 150 7e-38 gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Jant... 120 8e-29 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 100 8e-23 gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Jant... 100 1e-22 gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc... 95 5e-21 >gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase [Janthinobacterium sp. Marseille] Length = 264 Score = 150 bits (380), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 94/260 (36%), Positives = 142/260 (54%), Gaps = 3/260 (1%) Query: 3 LKDKVALITGSASGIGKEIAVEYAKQGAKVVIADLA-LEAAKATAEEIVKNGGT-AMAVA 60 L K AL+TGS SGIG IA A+QGA +V+ K +++N G + Sbjct: 6 LHGKTALVTGSTSGIGLGIAQALAQQGADIVLNGFGDANEIKTLQAALMRNYGVKCVHHP 65 Query: 61 MNVTDETQVDKGVADAVNTYGGLDIMISNAGIQIISPVAELSLENWRKMLAIHLDGAFLT 120 +++ +++ +A A +G +DI+++NAGIQ + + +E W ++AI+L AF T Sbjct: 66 ADMSKPAEIEAMMAFAAQQFGRVDILVNNAGIQHTETIEDFPVEKWDAIIAINLSSAFHT 125 Query: 121 TRAAMKAMIKQGRGGSIIYMGSVHSHLASPLKAPYVTAKHGLLGLAKTVAKEGAKDHIRT 180 TR A+ M++ G II + SVH + S K+ YV AKHG++GL K A E A I Sbjct: 126 TRLALP-MMQAKNWGRIINIASVHGLVGSVQKSAYVAAKHGIVGLTKVTALEMAHTGITC 184 Query: 181 NVICPGFVRTPLVEKQIPEQAKEFGISEEDVIKKIMLKDTVDGEFTTTQDVAQTAVFLAA 240 N ICPG+V TPLV+KQ+ +A G+S+E K ++ + GEF T Q + AVFL + Sbjct: 185 NAICPGWVLTPLVQKQVDARAAREGLSDEAAKKDLVSEKQPSGEFVTPQQLGALAVFLCS 244 Query: 241 FPTNALTGQSVVVSHGWHMQ 260 + G + + GW Q Sbjct: 245 EAAVQVRGAAWNMDGGWTAQ 264 >gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 278 Score = 120 bits (301), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 133/253 (52%), Gaps = 11/253 (4%) Query: 9 LITGSASGIGKEIAVEYAKQGAKVVIADLALEAAKATAEEIVKNGGTAMAVAMNVTDETQ 68 LITG+ +GIG+ A +A++G +V ++ EA A A E+ G A + +V E Sbjct: 36 LITGALTGIGRATAFAFAREGYRVAVSGRREEAGNALAAELRALGNEAEFLLADVRFEAD 95 Query: 69 VDKGVADAVNTYGGLDIMISNAGIQ-IISPVAELSLENWRKMLAIHLDGAFLTTRAAMKA 127 V V V +G +D+ ++NAG + ++P+ E S N+ + +++ G L+ + M+ Sbjct: 96 VRNLVEQTVVRFGRIDVAVNNAGTEGQLAPIVEQSAANYAETFGVNVLGTMLSLKHEMRV 155 Query: 128 MIKQGRGGSIIYMGSVHSHLASPLKAPYVTAKHGLLGLAKTVAKEGAKDHIRTNVICPGF 187 M+ QG GSII + SV + + YV +KH + GL K+ A EGA +R N + PG Sbjct: 156 MLAQGS-GSIINLSSVAGKVGIAGASVYVASKHAVEGLTKSAALEGAAAGVRVNAVAPGP 214 Query: 188 VRTPLVEKQIPEQAKEFGISEEDVIKKIMLKDTVDGEFTTTQDVAQTAVFLAAFPTNALT 247 V T ++++ + G SEE+ K L G T ++AQT VFLA+ + LT Sbjct: 215 VATEMLDRFV-------GGSEEN--KAGFLATIPAGRAATPDEIAQTIVFLASDKVSYLT 265 Query: 248 GQSVVVSHGWHMQ 260 GQS+ V G Q Sbjct: 266 GQSIAVDGGHTAQ 278 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 100 bits (249), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 128/258 (49%), Gaps = 16/258 (6%) Query: 3 LKDKVALITGSASGIGKEIAVEYAKQGAKVVIADLALEAAKATAEEIVKNGGTAMAVAMN 62 L +VAL+TG++ GIG+ IA E AK GAK VI E+ A E + NGG V ++ Sbjct: 6 LSGQVALVTGASRGIGRAIAQELAKLGAK-VIGTATSESGAAAISEYLGNGGK--GVVLD 62 Query: 63 VTDETQVDKGVADAVNTYGGLDIMISNAGIQIISPVAELSLENWRKMLAIHLDGAFLTTR 122 V D + + + +G + I+++NAGI + E W ++A +L +R Sbjct: 63 VNDAARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLSR 122 Query: 123 AAMKAMIKQGRGGSIIYMGSVHSHLASPLKAPYVTAKHGLLGLAKTVAKEGAKDHIRTNV 182 A ++ M+K + G II + SV + + Y AK G+ G+++ +A+E +I N Sbjct: 123 AVLRGMMK-AKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNC 181 Query: 183 ICPGFVRTPLVEKQIPEQAKEFGISEEDVIKKIMLKDTVDGEFTTTQDVAQTAVFLAAFP 242 I PGF+ T + + +SE+ + +L+ G +D+A FLA+ Sbjct: 182 IAPGFIDTDMTKT----------LSEQQI--AALLQQVPLGRLGVPEDIAAAVSFLASPQ 229 Query: 243 TNALTGQSVVVSHGWHMQ 260 + +TG ++ V+ G +M Sbjct: 230 ASYITGTTLHVNGGMYMN 247 >gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 272 Score = 100 bits (248), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 5/195 (2%) Query: 3 LKDKVALITGSASGIGKEIAVEYAKQGAKVVIADLALEAAKATAEEIVKNGGTAMAVAMN 62 + KVAL+TG++SG+G A A GA+V++A ++ K EI GG A V+++ Sbjct: 21 FEGKVALVTGASSGLGARFAKVLAMAGAQVILASRRVDRLKELRAEIEAEGGAAQVVSLD 80 Query: 63 VTDETQVDKGVADAVNTYGGLDIMISNAGIQIISPVAELSLENWRKMLAIHLDGAFLTTR 122 VTD + +A A G +DI+++N+G+ + +++ E++ M+ + GAF + Sbjct: 81 VTDYASIKSAIAHAETETGAIDILVNNSGVSASQRLVDVTPEDYAHMMDTNQRGAFFVAQ 140 Query: 123 AAMKAMIKQGRGG-----SIIYMGSVHSHLASPLKAPYVTAKHGLLGLAKTVAKEGAKDH 177 K MI + +G II +GSV P Y +K ++ + K +A E K Sbjct: 141 EVAKRMIARHKGDPKKQHRIINIGSVAGLRVVPELGLYCMSKAAVVHMTKAMAVEWGKFG 200 Query: 178 IRTNVICPGFVRTPL 192 I TN ICPG++ T + Sbjct: 201 INTNAICPGYIGTEM 215 >gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 249 Score = 94.7 bits (234), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/257 (28%), Positives = 130/257 (50%), Gaps = 18/257 (7%) Query: 3 LKDKVALITGSASGIGKEIAVEYAKQGAKVVIADLA-LEAAKATAEEIVKNGGTAMAVAM 61 L KVA + G + GIG I A+ GA V ++ + AKA A+EI GG A+A+ Sbjct: 7 LTGKVAFVQGGSRGIGAAIVKRLARDGAAVAFTYVSSADKAKAVAQEIEAAGGRALAIHA 66 Query: 62 NVTDETQVDKGVADAVNTYGGLDIMISNAGIQIISPVAELSLENWRKMLAIHLDGAFLTT 121 + +D + V + + A +G +DI+++NAG+ ++PV + LE++ + +A+++ F+ T Sbjct: 67 DSSDASAVQQAIQAAAKAFGRIDILVNNAGVLALAPVEDFKLEDFDRTVAVNVRSVFVAT 126 Query: 122 RAAMKAMIKQGRGGSIIYMGSVHS-HLASPLKAPYVTAKHGLLGLAKTVAKEGAKDHIRT 180 + A + M G GG II +GS ++ + A Y +K ++GL K +A++ I Sbjct: 127 QEAARHM---GEGGRIITIGSTNADRMPFAGGAVYAMSKAAIVGLTKGLARDLGPRGITV 183 Query: 181 NVICPGFVRTPLVEKQIPEQAKEFGISEEDVIKKIMLKDTVDGEFTTTQDVAQTAVFLAA 240 N + PG V T + +F D +K +M G + +++A +LA Sbjct: 184 NNVQPGPVDTDMNPAN-----SDF----ADTLKGLMAI----GRYGKDEEIASFVAYLAG 230 Query: 241 FPTNALTGQSVVVSHGW 257 +TG S+ + G+ Sbjct: 231 PEAGYITGASLTIDGGF 247 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.131 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 537,507 Number of extensions: 20051 Number of successful extensions: 138 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 106 Number of HSP's successfully gapped: 20 Length of query: 260 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 179 Effective length of database: 921,564 Effective search space: 164959956 Effective search space used: 164959956 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)