BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1052.p (255 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982501|ref|YP_001354050.1| AraC family transcriptional reg... 65 6e-12 gi|152982421|ref|YP_001354091.1| AraC family transcriptional reg... 64 1e-11 gi|152983217|ref|YP_001352654.1| AraC family transcriptional reg... 63 2e-11 gi|152983214|ref|YP_001352649.1| transcriptional regulator [Jant... 62 2e-11 >gi|152982501|ref|YP_001354050.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 338 Score = 64.7 bits (156), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 135 VPLLLDTLAQQPPQVKSRLHRMLARVEAQAAQPWTVADMAALAAISPSRLHEWFQQELGT 194 VP ++D+ + P + ++ R+ ++A + +AD+AA +S + E F + Sbjct: 214 VPRVMDS---KVPLSQGQMKRVNDYLQANLHGAFQIADLAASIGLSRTVFFERFVHTMKY 270 Query: 195 SPRAWLAEVRLAQACQLLRTSALPVAAIAQRCGYGDQSAMTHAMRKLRGTTPSAYRKQY 253 +P +L +R+ +A QLLR L + +A CGY DQS ++ ++ G +P YR + Sbjct: 271 TPNQYLQILRINRAKQLLRDRKLSLVDVAFACGYADQSHLSRFFKRFVGVSPGKYRGDF 329 >gi|152982421|ref|YP_001354091.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 330 Score = 63.5 bits (153), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 54/106 (50%) Query: 147 PQVKSRLHRMLARVEAQAAQPWTVADMAALAAISPSRLHEWFQQELGTSPRAWLAEVRLA 206 P ++++ R+ ++A + VAD+AA+ +S + E F +P +L +R+ Sbjct: 223 PLSQAQMQRVNDYLQANLDGSFQVADLAAVIGLSRTIFFERFTVTTKATPNQYLQVLRIN 282 Query: 207 QACQLLRTSALPVAAIAQRCGYGDQSAMTHAMRKLRGTTPSAYRKQ 252 +A QLLR L + IA CGY DQS + ++ G P YRK Sbjct: 283 RAKQLLRDGKLSLVDIAFACGYADQSHLARFFKRFVGVAPGRYRKD 328 >gi|152983217|ref|YP_001352654.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 323 Score = 62.8 bits (151), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 17/169 (10%) Query: 102 VPLTA---AASKLVEFMALSLAQSTAPAAGHA------LHHWVPLLLDTLAQQPPQ---- 148 VPL A A+ L + + LA+ST P G + L + L L + P Sbjct: 143 VPLVARFNGANGLRDQFVMLLAESTQPGIGSSVLTEALLKQCLVLALRQWGENDPSPLPW 202 Query: 149 ----VKSRLHRMLARVEAQAAQPWTVADMAALAAISPSRLHEWFQQELGTSPRAWLAEVR 204 RL R L + A +TV +A +A +S S FQ+ G SP + + VR Sbjct: 203 LAAVGDKRLSRALHAIFEHPAIAYTVDSLAMIAGMSRSAFAAAFQRAFGQSPMSLVRLVR 262 Query: 205 LAQACQLLRTSALPVAAIAQRCGYGDQSAMTHAMRKLRGTTPSAYRKQY 253 L +A +LL T+A+PVA +A+R G+ +S + A +L G PS +R+ + Sbjct: 263 LRRASELLITTAIPVAEVAKRVGFSSRSNFSLAFSQLYGLDPSRFRRTF 311 >gi|152983214|ref|YP_001352649.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 308 Score = 62.4 bits (150), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 59/104 (56%) Query: 150 KSRLHRMLARVEAQAAQPWTVADMAALAAISPSRLHEWFQQELGTSPRAWLAEVRLAQAC 209 +RL R L + Q A +TV +A +A +S S FQ+ G SP + + VRL +A Sbjct: 199 DTRLSRALHAIFEQPAIAYTVDSLAMIAGMSRSAFAAAFQRAFGQSPMSLVRLVRLRRAG 258 Query: 210 QLLRTSALPVAAIAQRCGYGDQSAMTHAMRKLRGTTPSAYRKQY 253 +LL T+ALPVA +A R G+ +S + A +L G PS +R+ + Sbjct: 259 ELLITTALPVAEVANRVGFSSRSNFSLAFSQLYGLDPSRFRRTF 302 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.130 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 544,662 Number of extensions: 20085 Number of successful extensions: 91 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 93 Number of HSP's successfully gapped: 4 Length of query: 255 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 174 Effective length of database: 921,564 Effective search space: 160352136 Effective search space used: 160352136 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)