BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1045.p
         (634 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980440|ref|YP_001352043.1| preprotein translocase SecD sub...   989   0.0  

>gi|152980440|ref|YP_001352043.1| preprotein translocase SecD
           subunit [Janthinobacterium sp. Marseille]
          Length = 619

 Score =  989 bits (2558), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/617 (77%), Positives = 555/617 (89%), Gaps = 1/617 (0%)

Query: 1   MNRYSLWKYALIVLALLFGVIYTVPNFFGESPAVQISSGKSTLKVEPALAGRVDQILKQG 60
           MNRY LWKY +I +ALL GV+YT+PNFFGESPAVQISS K+T+KV+ +L  +V+Q LK+ 
Sbjct: 1   MNRYPLWKYIIIAVALLLGVLYTLPNFFGESPAVQISSAKATVKVDSSLMSQVEQALKKD 60

Query: 61  NLGAESVAFDNSGAAPSVRARFASTDIQFKAKALLEKELNTDPSDPTYIVAFNLLPNTPQ 120
            +  + + ++  G   +VR RF +TDIQFKAK +LEK+LNTDP DPTY+VAFNLLPNTP 
Sbjct: 61  GIQYDGIVYETIGTQGTVRVRFPNTDIQFKAKGILEKDLNTDPEDPTYLVAFNLLPNTPG 120

Query: 121 WLQSLHAFPMYLGLDLRGGVHFLMQVDIKAVLNKRLQGLQSSVRSLLRDKNIRQSGINRV 180
           WLQSL+A PMYLGLDLRGGVHFLMQVD KAV+NKR+ GLQ+S RS+LRDKNIR +GI+R 
Sbjct: 121 WLQSLNAAPMYLGLDLRGGVHFLMQVDTKAVMNKRVLGLQASARSILRDKNIRHAGISRS 180

Query: 181 GDSIEISFRDADTRNKARAAL-GELQEMLLTDAGSGDDLKLIATLRPEALKQTQEDGVKQ 239
           GDS+EI FRDADTRNKAR  L  EL+E++LTDAGSG+DLKL+  L P ALKQT ED V+Q
Sbjct: 181 GDSVEILFRDADTRNKARTVLTNELRELVLTDAGSGEDLKLVGALNPTALKQTVEDAVQQ 240

Query: 240 NISTLSKRVNELGVAEPLIQRQGADRIVVELPGVQDVSRAKDIIGRTATLEVRMVDDSVV 299
           NI+TLSKRVNELGV EPLIQRQGADRIVV++PGVQDVSRAKDIIG+TATLEVR+VD++V 
Sbjct: 241 NITTLSKRVNELGVTEPLIQRQGADRIVVQMPGVQDVSRAKDIIGKTATLEVRLVDETVT 300

Query: 300 RGTEETSAIPFGSELFKVGKGAPVVLVKEPVLTGDYISNASASFDENHQPAVSIDLNGDG 359
           RGTEET+AIPFGSELFKVGK APVVL K+P++TG+YIS+ASASFD+NHQP+VSIDLNGDG
Sbjct: 301 RGTEETAAIPFGSELFKVGKNAPVVLYKDPIITGEYISSASASFDQNHQPSVSIDLNGDG 360

Query: 360 GRKMREATRDKVGKAMAIVLFEKGKGEVLTVATIRSELGSRFQITGMGSPEAASDLALLL 419
           GR+MREATR +VGKAMAIVLFEK KGEVLTVATIR ELG+RFQITGMGS EAASDLALLL
Sbjct: 361 GRRMREATRTRVGKAMAIVLFEKNKGEVLTVATIRDELGARFQITGMGSAEAASDLALLL 420

Query: 420 RAGSLAAPMEIIEERTIGPQLGADNIKKGFDSVLYGFVAMAIFMVIYYQLFGFFSALALS 479
           RAGSLAAPMEIIEERTIGPQLGA+NI KGFD+ LYGF+A+ IFM+IYY+ FGFFS  AL+
Sbjct: 421 RAGSLAAPMEIIEERTIGPQLGAENITKGFDATLYGFIAIGIFMIIYYRAFGFFSVFALA 480

Query: 480 VNVLLLVALLSTLQVTLTLPGIAAIALALGMAIDSNVLINERIREELRAGNSPQAAIAAG 539
           VN++LL+ALLS LQ TLTLPGIAAIAL LGMAID+NVLINERIREELRAG+SPQ AI+ G
Sbjct: 481 VNLMLLIALLSLLQATLTLPGIAAIALTLGMAIDANVLINERIREELRAGHSPQTAISMG 540

Query: 540 FDRAWATILDSNVTTLIAGLALLIFGSGAIRGFAVVHCLGILTSMFSAVFFSRGVVNLWY 599
           F+RAWATILDSNVTT+IAGLALLIFGSGA+RGFAVVHCLGILTS+FSAVF SRGVVNLWY
Sbjct: 541 FERAWATILDSNVTTMIAGLALLIFGSGAVRGFAVVHCLGILTSIFSAVFVSRGVVNLWY 600

Query: 600 GRKKRLSSLAIGQIWKP 616
           GRKK+L+S++IGQ+WKP
Sbjct: 601 GRKKKLTSVSIGQVWKP 617


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,305,585
Number of extensions: 52484
Number of successful extensions: 191
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 2
Length of query: 634
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 545
Effective length of database: 891,988
Effective search space: 486133460
Effective search space used: 486133460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)