BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1043.p (401 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981658|ref|YP_001354737.1| chromate transport protein chrA... 97 2e-21 gi|152981660|ref|YP_001353631.1| chromate transport protein chrA... 88 9e-19 gi|152981870|ref|YP_001352877.1| ChrA half sized-like protein [J... 61 1e-10 >gi|152981658|ref|YP_001354737.1| chromate transport protein chrA [Janthinobacterium sp. Marseille] Length = 457 Score = 96.7 bits (239), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 116/433 (26%), Positives = 177/433 (40%), Gaps = 58/433 (13%) Query: 1 MSTT--TTAPSPRE-------PIWPLFLVFLRLGLTSFGGPAAHLGYFRQEFVARRHWLS 51 MSTT T S E P W ++ +LG FGGPAA + +E V +R W+S Sbjct: 1 MSTTVSTQVESAEEVARPTEVPFWEALKLWFKLGFIGFGGPAAQISLMHRELVEQRRWIS 60 Query: 52 EQTYADLVAMCQFLPGPSSSQVGLAIGLIRGGYRGALAAWLGFTLPSAVLLMVVALSVLS 111 E+ + + C LPGP Q+ +G + +G +AA + F LPS L ++ALS L Sbjct: 61 ERRFLHALNYCMLLPGPEGQQLATYMGWLMHRTKGGIAAGVLFVLPS--LFFLIALSWLY 118 Query: 112 DARW---LSGEVVHGLKIVAVAIVAQAVWGMAQTLCRGPQRLLIMILAA----------- 157 A L + +G+K A+V AV + + L+ I AA Sbjct: 119 IAYGHVPLIAGLFYGIKPAITAVVVHAVHRIGSRALK--NNLMWAIAAASFVAIFAMNVP 176 Query: 158 ----LAT----GLLHGSLVQLGVIVLAGLAGRLLLHGPQMTLQEQLPLVVS---RRAGRA 206 +AT G L G + V G +GP + + + P R G Sbjct: 177 FPVIVATAALIGYLGGRYIPNKFTVGGGHGESKKSYGPAL-IDDDTPTPEHAQFRWFGLT 235 Query: 207 CLLLFFVLLAGIPLLASLYPAPW---LQQVNIFY-RVGSLVFGGGHVVLP-LLQAELVPT 261 +L+ +L +P+ W L Q+ F+ + L FGG + VLP + Q + Sbjct: 236 KILIVGGVLWCVPMAVLTLRFGWDHTLTQMGWFFTKAALLTFGGAYAVLPYIYQGAIGHY 295 Query: 262 GWVDKDVFLAGYGAAQAVPGPLFTLAAYLGVVMS----------SWPNGVTGGVLCLLAI 311 W+ + G +A PGPL + A++G V + + G T VL Sbjct: 296 NWLTPTQMIDGLALGEANPGPLIMVVAFVGFVGAYVQAVFGPDLQFLAGATAAVLVTWFT 355 Query: 312 FAPSFLLVTGLLPFWDEVRRQRAMQAALAGVNAAVVGLLLA----ALYQPVWTSAIFNGR 367 F PSF+ + P + A L+G+ AAVVG++L Y +W Sbjct: 356 FLPSFIFILAGGPLVESTHGNLKFTAPLSGITAAVVGVILNLAVFFAYHVLWPQGFAGAF 415 Query: 368 DLLIALAAFAALV 380 D + AL + AA + Sbjct: 416 DWIAALMSIAAAI 428 >gi|152981660|ref|YP_001353631.1| chromate transport protein chrA [Janthinobacterium sp. Marseille] Length = 477 Score = 88.2 bits (217), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 95/367 (25%), Positives = 154/367 (41%), Gaps = 35/367 (9%) Query: 20 VFLRLGLTSFGGPAAHLGYFRQEFVARRHWLSEQTYADLVAMCQFLPGPSSSQVGLAIGL 79 ++ +LG FGGPAA + +E V +R W+SE+ + + C LPGP + Q+ +G Sbjct: 50 LWFKLGFLGFGGPAAQISLMHRELVEQRRWISEKRFLHALNYCMLLPGPEAQQLATYMGW 109 Query: 80 IRGGYRGALAAWLGFTLPSAVLLMVVA-LSVLSDARWLSGEVVHGLKIVAVAIVAQAVWG 138 + +G +AA L F LPS L+ ++ L + L + +G+K A+V AV Sbjct: 110 LMHRSKGGIAAGLLFVLPSLFFLITLSWLYIAYGHLPLIAGLFYGIKPAITAVVIHAVHR 169 Query: 139 MAQTLCRGPQRLLIMILAALATGLLH--GSLVQLGVIVLAGLAGRLL--------LHG-P 187 + + I + +A + + L+ +LA L R + HG P Sbjct: 170 IGSRALKNGMMWAIAAASFIAIFVFNIPFPLIIACAALLAYLGSRYMPQKFSANGSHGQP 229 Query: 188 QMT-----LQEQLPLVVS---RRAGRACLLLFFVLLAGIPLLASLYPAPWLQQVN----I 235 + + + P R AG +LL LL +P+ W + Sbjct: 230 DKSYGAALIDDDTPPPAHAQFRWAGLYKILLIGGLLWCVPMAVLALALGWQHTLTQMGWF 289 Query: 236 FYRVGSLVFGGGHVVLP-LLQAELVPTGWVDKDVFLAGYGAAQAVPGPLFTLAAYLGVVM 294 F + L FGG + VLP + Q + W+ + G +A PGPL + A++G V Sbjct: 290 FTKAALLTFGGAYAVLPYIYQGAITHYNWLTPTQMIDGLALGEANPGPLIMVVAFVGFVG 349 Query: 295 S----------SWPNGVTGGVLCLLAIFAPSFLLVTGLLPFWDEVRRQRAMQAALAGVNA 344 + + G T VL F PSF+ + P + A L+G+ A Sbjct: 350 AYVQAIFGPELQFIAGATAAVLVTWFTFLPSFIFILAGGPLVESTHGNLKFTAPLSGITA 409 Query: 345 AVVGLLL 351 AVVG++L Sbjct: 410 AVVGVIL 416 >gi|152981870|ref|YP_001352877.1| ChrA half sized-like protein [Janthinobacterium sp. Marseille] Length = 193 Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 11/124 (8%) Query: 2 STTTTAPSPREPIWPLFLVFLRLGLTSFGG--PAAHLGYFRQEFVARRHWLSEQTYADLV 59 +T A + LF FL LG+ +FGG P AH + V + WL E + +L+ Sbjct: 10 TTQAVARGEHPTLRQLFFGFLGLGMMAFGGALPLAH-----RMLVEDKRWLDESEFTELL 64 Query: 60 AMCQFLPGPSSSQVGLAIGLIRGGYRGALAAWLGFT-LPSAVLLMVVALSVLSDARWLSG 118 +CQFLPG + + +A+G+ G +GA + +G +PS VL+M L +L + Sbjct: 65 GLCQFLPGGNMINLSVAVGMRFRGVKGAFVSIMGLVAMPSVVLVM---LGMLYERFQNDA 121 Query: 119 EVVH 122 +V H Sbjct: 122 QVTH 125 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.141 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 794,282 Number of extensions: 31043 Number of successful extensions: 176 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 6 Length of query: 401 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 316 Effective length of database: 906,776 Effective search space: 286541216 Effective search space used: 286541216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)