BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1042.p (723 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/re... 226 3e-60 gi|152982741|ref|YP_001352306.1| hybrid two-components system re... 225 8e-60 gi|152982458|ref|YP_001353582.1| sensor histidine kinase/respons... 135 9e-33 gi|152982336|ref|YP_001352548.1| hypothetical protein mma_0858 [... 110 2e-25 gi|152982497|ref|YP_001353355.1| two-component hybrid sensor and... 95 1e-20 >gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 702 Score = 226 bits (577), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 119/288 (41%), Positives = 177/288 (61%), Gaps = 5/288 (1%) Query: 74 RHLVLAKEAADQAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLRSTRLDTQQAEFAKAIED 133 R L +AK+ A+ A + FL+ MSHEIRTPMN +LGM L + D Q E + + Sbjct: 316 RDLSIAKDEAESANRAKSEFLAVMSHEIRTPMNGMLGMMQLALAETSDRTQREHLETAQY 375 Query: 134 SAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLLEVVEASTEALSFKAHEKQVRLLAHVDS 193 SA ALL I+ND+LDFSK++ G + +FDLL+ +++ ++ ++ + + L + Sbjct: 376 SAEALLSILNDILDFSKLESGNLQFEAAQFDLLKTMDSVINLMASRSCDASLALAVECPA 435 Query: 194 RLPERLLGDPGRIRQILLNLLGNALKFTHVGEVLLRVQALHVAGDHCRVRFEVRDSGIGM 253 +P L+GD R+RQ+LLNL+ NALKFT G V L+V L++ R+RF V DSGIG+ Sbjct: 436 EIPRMLVGDANRLRQVLLNLINNALKFTEQGGVTLKVALLNLNAGQARMRFSVIDSGIGI 495 Query: 254 DEDTLRRLFSPFTQADNSVTRQYGGTGLGLSICKRLVELMGGKIGVDSSPGAGSCFWFEL 313 + RLF F+QADNS++R++GGTGLGLSICK++V++ GG IGV S+ G GS FWFEL Sbjct: 496 APEAQARLFQAFSQADNSISRRFGGTGLGLSICKKIVDMQGGSIGVHSAEGKGSEFWFEL 555 Query: 314 GIPV-----AQPPRFASHIDAAKKRQVALLETHDASAAMLHEYLRGAG 356 V P A+ + ++ ++ L E ++ + + L+ AG Sbjct: 556 QFGVGGEVEVTPEVLAAPAKSTRQLRILLAEDNEINQKVAATLLKKAG 603 Score = 100 bits (248), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 58/138 (42%), Positives = 82/138 (59%), Gaps = 5/138 (3%) Query: 451 GGRDQV--ESLAAQARPFRQAGQQELLLVEDNVMNQKVAVYQLNAMGYAVDIASNGAEAL 508 GG +V E LAA A+ RQ +LL EDN +NQKVA L G+ V+IA NG EA+ Sbjct: 560 GGEVEVTPEVLAAPAKSTRQL---RILLAEDNEINQKVAATLLKKAGHTVEIAQNGLEAV 616 Query: 509 EKLGQRKYALILMDCQMPILDGYETTRRIRRLQGELAHTPIVAMTANAMAGDREQCLEAG 568 + + + ++LMD MP +DG TR IR + G A PIVA+TA D + C++AG Sbjct: 617 QAVQNSVFDVVLMDMHMPEMDGLAATRAIRNMSGPAATLPIVALTAAGALSDIQICMDAG 676 Query: 569 MDDYLTKPLLRSQLAAML 586 M+ +L KP +L+++L Sbjct: 677 MNYFLVKPFRMERLSSIL 694 >gi|152982741|ref|YP_001352306.1| hybrid two-components system response regulator and sensor kinase [Janthinobacterium sp. Marseille] Length = 948 Score = 225 bits (573), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 178/525 (33%), Positives = 262/525 (49%), Gaps = 55/525 (10%) Query: 76 LVLAKEAADQAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLRSTRLDTQQAEFAKAIEDSA 135 L+ AK AD A + FL+TMSHE+RTP++ +LG L T + QQ + A++ S+ Sbjct: 460 LLKAKLHADDANTAKTLFLTTMSHELRTPLHGLLGALELFSLTAVTDQQRMYLHAMQQSS 519 Query: 136 HALLGIVNDVLDFSKIDVGKMDIAVVEFDLLEVVEASTEALSFKAHEKQVRLLAHVDSRL 195 LL V+ LD ++I+ G ++ F L ++E A + A K + + D + Sbjct: 520 SILLKTVSQTLDIARIEAGAFELETTAFSSLALLEEVIAAYAAPAERKALCICGVPDPAI 579 Query: 196 PERLLGDPGRIRQILLNLLGNALKFTHVGEVLLRVQALHVAGDHCRVRFEVRDSGIGMDE 255 PE L+GD RI+QIL NL+ NA+KFT G+V+LR + L++ + +V DSG G+D+ Sbjct: 580 PELLVGDVTRIKQILNNLMSNAIKFTDSGQVVLRSRLLNLEHGMATIVLQVEDSGRGIDQ 639 Query: 256 DTLRRLFSPFTQADNSVTRQYGGTGLGLSICKRLVELMGGKIGVDSSPGAGSCFWFELGI 315 L R+F PF Q + + + GTGLGLSIC+R ++MGG I S PG+G+ F + + Sbjct: 640 VHLGRIFEPFYQVEQNAQLK-SGTGLGLSICRRFAQMMGGTIWAMSEPGSGTSFSLTVSL 698 Query: 316 PVAQPPRFASHIDAAKKRQVALLETHDASAAMLHEYLR-------------GAGLESLRY 362 V Q DAA +AL D ++ LR GA + Sbjct: 699 QVKQ--------DAAPSEVLAL----DGVRVHVYSDLRELTTNICGWLGKWGADAHPYQA 746 Query: 363 GSATDALAALTGPAASANGIDTVIVSSEL-RDLPANAVLTRLQAERPDLTCILLDHGVHG 421 G+A D I I+ S L D+ R+ AE LT + H HG Sbjct: 747 GNAKD----------DGEAILLEILHSRLAADIAWQG--PRIAAE---LTAL---HAGHG 788 Query: 422 LNIDGKSTSTSLQLPLRKQQLLRAVMKLSGGRDQVESLAAQARPFRQAGQQELLLVEDNV 481 N +S T +R + AV +L +D VES+ +P + +L VEDN Sbjct: 789 RN---ESERTIRGYCVRA--IAEAVRRLQPYQDLVESI--HIKPLAFSLNLRVLAVEDNP 841 Query: 482 MNQKVAVYQLNAMGYAVDIASNGAEALEKLGQRKYALILMDCQMPILDGYETTRRIRRLQ 541 +NQ + QL +G V + NG EAL++ ++ IL D MP++DGYE R+R L Sbjct: 842 INQMILKEQLAYLGCDVAFSGNGREALDRPDVMEFDAILTDINMPLVDGYELAERLRGL- 900 Query: 542 GELAHTPIVAMTANAMAGDREQCLEAGMDDYLTKPLLRSQLAAML 586 G L PI ++AN + D ++CL AGM+ +TKPL S L L Sbjct: 901 GYL--KPIFGISANVIPEDEQRCLAAGMNLLMTKPLSLSVLQTNL 943 >gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 1096 Score = 135 bits (340), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 90/249 (36%), Positives = 140/249 (56%), Gaps = 20/249 (8%) Query: 69 NQRSARHLVLAKEAADQAMLTRGAFLSTMSHEIRTPMNAVLGMAG-LLRSTRLDTQQAEF 127 +QR+ L AKEAA+ A + +++ +SHE+R+P+N++LG + LL++ +LD Sbjct: 626 HQRTDAALQSAKEAAESANQAKTRYVAGISHELRSPLNSILGYSQILLKNEQLDAAPRTA 685 Query: 128 AKAIEDSAHALLGIVNDVLDFSKIDVGKMDI--AVVEF-----DLLEVVEASTEALSFKA 180 + I+ S LLG+V+++LD ++I+ +M + A + F DLL +V EA Sbjct: 686 IQTIQRSGEHLLGLVDELLDLARIEADRMRLEPAPILFAAFIDDLLSMVRPQAEA----- 740 Query: 181 HEKQVRLLAHVDSRLPERLLGDPGRIRQILLNLLGNALKFTHVGEVLLRVQALHVAGDHC 240 K +RL LP +L D R+RQIL+NLL NAL+FT G V LHV Sbjct: 741 --KGLRLQYTHGGDLPHYVLADGKRLRQILINLLTNALRFTDTGSV-----TLHVECTGV 793 Query: 241 RVRFEVRDSGIGMDEDTLRRLFSPFTQADNSVTRQYGGTGLGLSICKRLVELMGGKIGVD 300 +RF+V D+GIG+ +R+F PF + R G GLGL+I ++L+ +M G + + Sbjct: 794 SMRFDVIDTGIGIAVQDRQRIFQPFERGAAGRLRGEPGAGLGLAITEKLILMMNGSLNLI 853 Query: 301 SSPGAGSCF 309 S+ G GS F Sbjct: 854 STQGQGSTF 862 Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 4/111 (3%) Query: 472 QELLLVEDNVMNQKVAVYQLNAMGYAVDIASNGAEALEKLGQRKYALILMDCQMPILDGY 531 + LL+V+D + + + L +G+ V A++G E ++ L IL+D M +DG+ Sbjct: 890 RTLLVVDDQPVQRHMLSGMLIPLGFNVREAASGHECIDLLQDFVPDAILLDIGMDGMDGW 949 Query: 532 ETTRRIRRLQGELAHTPIVAMTANAMAGDREQCLEAGMDDYLTKPLLRSQL 582 ET RR+R G PI+ ++A+ D + AG D++ KP+L S+L Sbjct: 950 ETARRVRASSG----IPIIFVSADLFENDPVKLKAAGCQDFVGKPVLESEL 996 >gi|152982336|ref|YP_001352548.1| hypothetical protein mma_0858 [Janthinobacterium sp. Marseille] Length = 485 Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 112/215 (52%), Gaps = 9/215 (4%) Query: 474 LLLVEDNVMNQKVAVYQLNAMGYAVDIASNGAEALEKLGQRKYALILMDCQMPILDGYET 533 +L V+DN +N ++A L G VD AS+G +AL + R Y LILMDCQMP +DGY+T Sbjct: 235 VLAVDDNPVNLQIAERMLARFGCQVDTASDGQQALRMVHVRHYDLILMDCQMPNMDGYQT 294 Query: 534 TRRIRRLQGELAHTPIVAMTANAMAGDREQCLEAGMDDYLTKPLLRSQLAAMLAHYLPAV 593 T +R + H PI+ ++ +R+ CL GMDD++ KP+ L+ ML+ +L Sbjct: 295 TALLRAAETGDEHVPIIGWSSGVNRSERDTCLAIGMDDFIFKPIRMRPLSDMLSRWL--- 351 Query: 594 QEADSEQSTAPMLDQAR-LQELFGQDSALTNEMLAMFIEHTTPVMQELARHCQDSDPLLG 652 + A +E+S D Q +FG D A E++ +F+ + L +D L Sbjct: 352 KPASTERSMVRNDDDLEATQAMFGADFA---ELVDLFLTDSPKRFVFLHEAILANDAL-- 406 Query: 653 EIQALGHRLAGSCLNLGIQALGQLGRQMEMAARQG 687 + H L GS ++G L L R++E+ A+ Sbjct: 407 TVAKFAHVLCGSTSSIGATTLAALCRELEIRAKNN 441 >gi|152982497|ref|YP_001353355.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] Length = 599 Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 19/244 (7%) Query: 79 AKEAADQAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLRSTRLDTQQAEFAKAIEDSAHAL 138 +KE+AD++ + FL+ SH++R P++A+ G+LR L+ + + IE + A+ Sbjct: 216 SKESADRSNQAKSQFLAAASHDLRQPVHALSLYVGVLREQSLNAKSRQLVDHIERATAAM 275 Query: 139 LGIVNDVLDFSKIDVGKMDIAVVEFDLLEVVEASTEALSFKAHEKQVRLLAHVDSRLPER 198 + + +L+ S++D G + + L +++ + +A K + L H +P Sbjct: 276 GRLFDGLLNISRLDAGVIRPRLRHCSLAALLDQLQLEYAPRAATKSLVLRLH-RGVVPA- 333 Query: 199 LLGDPGRIRQILLNLLGNALKFTHVGEVLLRVQALHVAGDHCR-----VRFEVRDSGIGM 253 + DP + +IL NL+ NA++ T G VL+ CR V+ EV D+G+G+ Sbjct: 334 VYSDPVLLDRILRNLVDNAIRHTQSGGVLIA----------CRRRGKFVQVEVWDTGVGI 383 Query: 254 DEDTLRRLFSPFTQADNSVTRQYGGTGLGLSICKRLVELMGGKIGVDSSPGAGSCFWFEL 313 ++F F Q N Q G GLGL+I +R +L+G ++ + S PG GS F+L Sbjct: 384 AAADQEKIFMEFHQVGNPERNQSKGLGLGLAIVRRTADLLGHRLILRSRPGRGSV--FKL 441 Query: 314 GIPV 317 +PV Sbjct: 442 SLPV 445 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,525,093 Number of extensions: 60145 Number of successful extensions: 386 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 348 Number of HSP's successfully gapped: 45 Length of query: 723 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 633 Effective length of database: 888,291 Effective search space: 562288203 Effective search space used: 562288203 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)