BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1041.p (345 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983033|ref|YP_001352592.1| hypothetical protein mma_0902 [... 133 2e-32 gi|152982863|ref|YP_001355300.1| hypothetical protein mma_3610 [... 120 1e-28 gi|152981344|ref|YP_001351979.1| two-components system response ... 66 3e-12 gi|152980521|ref|YP_001353781.1| chemotaxis-specific methylester... 62 5e-11 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 62 7e-11 >gi|152983033|ref|YP_001352592.1| hypothetical protein mma_0902 [Janthinobacterium sp. Marseille] Length = 291 Score = 133 bits (334), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 7/209 (3%) Query: 132 IEHLAEQVQEKSHQSNTLALNSVDLLTRAAGYRDPETGEHLVRMANYTRIIASHLGLPKA 191 + ++ +KS+ + L S+ ++ RDP TG HL R++ + +A LG+ + Sbjct: 4 LSRISNLFTDKSNTNRKDLLVSLLIMAWVVEARDPYTGGHLWRVSRFAHRLALELGMSET 63 Query: 192 EQDLLLAAAPMHDIGKMGIPDHILLKPGRLDEEELKIMRLHAQIGADILRDSPSVLLQTA 251 + + +HD+GK+GIPD IL K +L EEE ++R H +IG +L + P L A Sbjct: 64 DAARIAIGGFLHDLGKVGIPDQILNKKDKLSEEEYDVIRTHPEIGWRMLANHP--LAHIA 121 Query: 252 SQIAHSHHEKWDGSGYPNGLKGEDIPLYGRIVAVADVFDALTSSRPYKKGWSLADAQRYL 311 HHE DG GYP G++G DIP+ RIV + D FDA+TS+RPY+KG + A + Sbjct: 122 EHAIRFHHETPDGKGYPTGIRGTDIPVEARIVGICDAFDAMTSTRPYRKGMPIEKALSII 181 Query: 312 RDNAGSHFDPRCVDAFFA-----GWEEVV 335 G FD F A W VV Sbjct: 182 ESELGRQFDSIIGAKFVALGKLGHWNHVV 210 >gi|152982863|ref|YP_001355300.1| hypothetical protein mma_3610 [Janthinobacterium sp. Marseille] Length = 194 Score = 120 bits (301), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 3/164 (1%) Query: 164 RDPETGEHLVRMANYTRIIASHLGLPKAEQDLLLAAAPMHDIGKMGIPDHILLKPGRLDE 223 RDP+ +HL R+ + T ++GL + E LL A +HDIGK+ I +H+L KP RL Sbjct: 24 RDPDLADHLQRLDSKTTQFGRYIGLSETESSLLGIGAGIHDIGKLCINEHVLNKPSRLTS 83 Query: 224 EELKIMRLHAQIGADILRDSPSVLLQTASQIAHSHHEKWDGSGYPNGLKGEDIPLYGRIV 283 E ++ H G +L +P L + HHE +DGSGYP+GL GE+IPL+ RIV Sbjct: 84 AEFFFIKQHPMAGYQLL--APLELDTRVTDCVLHHHENFDGSGYPHGLAGENIPLFARIV 141 Query: 284 AVADVFDALTSSRPYKKGWSLADAQRYLRDNAGSHFDPRCVDAF 327 + D +DA+T +RPY KG S ++A L + + +DP + +F Sbjct: 142 RIWDSYDAITMNRPYHKGRSPSEALALLEKDK-ALYDPALLASF 184 >gi|152981344|ref|YP_001351979.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 65.9 bits (159), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 4/119 (3%) Query: 2 KILIVDDDKTNLSLFTHMLGQLPDTDISTCPDALEALQWCGAHAPDLILLDYMMP-GMDG 60 + LI++DD N L ++ + + C D +E ++ D+I+LD M+P GMDG Sbjct: 3 RCLIIEDDTHNALYIAKGLKEI-GYEATVCADGIEGMELAVGGEWDVIILDRMLPQGMDG 61 Query: 61 LDFLSRFRALPGQEMTPVIMITADMGLQVRHKALQMTANDFLSKPVNRVELLARVKNML 119 L L+ R + + TPV++++A + R + LQ ND+L+KP EL ARV+ +L Sbjct: 62 LSILAALREM--GKRTPVLILSALSAIDERVRGLQAGCNDYLTKPFAFPELAARVEALL 118 >gi|152980521|ref|YP_001353781.1| chemotaxis-specific methylesterase [Janthinobacterium sp. Marseille] Length = 359 Score = 62.0 bits (149), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 6/108 (5%) Query: 1 MKILIVDDDKTNLSLFTHMLGQLPDTDI-STCPDALEALQWCGAHAPDLILLDYMMPGMD 59 +K+LIVDD S+ ++ PD ++ PD + A PD++ LD MP MD Sbjct: 3 IKVLIVDDSALIRSVMKEIINSQPDMEVVGVAPDPIVARDLIKQTNPDVLTLDVEMPRMD 62 Query: 60 GLDFLSRFRALPGQEMTPVIMITA--DMGLQVRHKALQMTANDFLSKP 105 GLDFL + L PV+M+++ + G + +AL++ A DF++KP Sbjct: 63 GLDFLEKLMRL---RPMPVVMVSSLTERGSDITLRALELGAVDFVTKP 107 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 61.6 bits (148), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 1 MKILIVDDDKTNLSLFTHMLGQLPDTDISTCPDALEALQWCGAHAPDLILLDYMMPGMDG 60 MKIL+V+D+ + L + + D E LQ + +L++LD M+P +DG Sbjct: 1 MKILLVEDEVKSGEYLRKGLREAGFV-VDWARDGAEGLQLALQESYELVILDVMLPLLDG 59 Query: 61 LDFLSRFRALPGQEMTPVIMITADMGLQVRHKALQMTANDFLSKPVNRVELLARVKNML 119 L R + TPV+ +TA ++ R K L++ A+D+L KP + +EL+ARV+ +L Sbjct: 60 WQLLRELRKVRD---TPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLL 115 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 810,164 Number of extensions: 33555 Number of successful extensions: 185 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 194 Number of HSP's successfully gapped: 18 Length of query: 345 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 261 Effective length of database: 910,473 Effective search space: 237633453 Effective search space used: 237633453 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)