BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1040.p
         (322 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981680|ref|YP_001352254.1| signal transduction protein [Ja...    70   1e-13

>gi|152981680|ref|YP_001352254.1| signal transduction protein
           [Janthinobacterium sp. Marseille]
          Length = 291

 Score = 70.5 bits (171), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 7/209 (3%)

Query: 20  LPSPGGVRLTIMRMCAQDDPDMAELIHLVQADPALSGRIIRIVNVLNAERVRPIASVSMD 79
           LP+   +   +M+    D+ D+  +   V  D ALS + ++  N         + ++   
Sbjct: 25  LPALPAIVQDLMKTIGPDETDINVITRKVAMDQALSAKTLQFANSSFYGLQSKVTTIQQ- 83

Query: 80  SMLLVGLQAVRQLALALSLAETTAPASCTNFKLPAFWAHSFAMACGAQAISGHTRVAPLG 139
           ++ L+G+ AVR +  A +L       +C  F   A W HS A A  A+ ++ H  V    
Sbjct: 84  AITLIGVNAVRHVVTATALTGYFPQNNCAGFDFFALWRHSVATAVCARVLARHLHVNQ-D 142

Query: 140 EMFTTGLLANIGKLTLASAHPSAYSSLLTRPLDASTQ-LTMEQSLFGFNHLNIAAALMQD 198
             FT GLL +IG+L L +   + Y +++    +     L  EQ + G +H+    AL   
Sbjct: 143 YAFTAGLLHDIGRLVLVTYFRNEYEAVIAYRQEHDCHWLEAEQEVLGVDHVMAGEALAAH 202

Query: 199 WKIPELFCDAVLHYEAPVPSEELPAPRSV 227
           W     F D + H  A   + E    RS+
Sbjct: 203 WN----FSDTIRHAIAGHHNPEQQKVRSL 227


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.131    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 708,122
Number of extensions: 27023
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 239
Effective length of database: 914,170
Effective search space: 218486630
Effective search space used: 218486630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)