BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1039.p (203 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981487|ref|YP_001352450.1| LuxR family DNA-binding respons... 103 6e-24 gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding respons... 84 4e-18 gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding respons... 84 9e-18 gi|152981504|ref|YP_001353304.1| LuxR family DNA-binding respons... 72 2e-14 gi|152981499|ref|YP_001354599.1| LuxR family DNA-binding respons... 68 5e-13 >gi|152981487|ref|YP_001352450.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 213 Score = 103 bits (258), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 74/210 (35%), Positives = 110/210 (52%), Gaps = 11/210 (5%) Query: 3 ISRLLIIDDHALFRCGLRLVLQAALPQATISEAGSLEDAMRA-EDAQAPDMVLLDIQLGG 61 +S +L+IDDHA+FR GL L L A P I S +A++ E + ++D L Sbjct: 1 MSSVLLIDDHAMFREGLTLALTQADPTLQIHCVASGNEALQLLETETSISTAMMDYYLPD 60 Query: 62 LNGIDGMAVLARKWPDVPIIILSADDTDGTVRAATQRGAAAFVSKAATAEHILQVLLEVA 121 + G + L + P + I+ LSA + VR A GA F+ K+A ++ + L V Sbjct: 61 IGGGALLQRLRQLRPGLRILALSASEDPDDVRHALASGAHGFIHKSADSKTLFAALSSVM 120 Query: 122 GGRHTLPTPSGQVE---------ASAKPQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENT 172 GR LP P+ +++ AS + TPRQ EVL L+ GL N I +L ++E T Sbjct: 121 QGRGYLP-PTFKLDTHDGGSNDDASLLSRLTPRQMEVLRLMCDGLRNGEIADQLGMTEKT 179 Query: 173 IRGHVQAILAALEVDNRAEAAFAARRRGLV 202 ++ HV A+L+ L V NR +A ARR GL+ Sbjct: 180 VKAHVSAVLSGLGVLNRTQATVVARRAGLL 209 >gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 214 Score = 84.3 bits (207), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 107/208 (51%), Gaps = 9/208 (4%) Query: 5 RLLIIDDHALFRCGLRLVLQAALPQATISEAGSLEDAMRAEDAQAPDMVLLDIQLGGLNG 64 ++LI DDHA+ R GL+ ++ A EA + E+ ++ + D+++LD+ + G +G Sbjct: 3 QILIADDHAIIRDGLKQIISFVSNMAVAGEASNGEEVLQKLRSLQVDVLVLDMSMPGRSG 62 Query: 65 IDGMAVLARKWPDVPIIILSADDTDGTVRAATQRGAAAFVSKAATAEHILQVLLEVA-GG 123 I + + PD+PI++LS A + GA+ +++K + +++ + +VA GG Sbjct: 63 IALIQQINAIKPDLPILVLSMHQESQYAVQAMRAGASGYITKNTASSQLIEGIRKVAEGG 122 Query: 124 RHTLPTPSGQ-VEASAKPQ-------FTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRG 175 P S + ++ KP+ T R++++ +L +G + I + L+LS TI Sbjct: 123 TFVSPEISAKLIKQLHKPETDLPHTKLTAREFQIFSMLVEGHSVNDIAKILSLSNKTIST 182 Query: 176 HVQAILAALEVDNRAEAAFAARRRGLVS 203 H A+L +E A + A + GL++ Sbjct: 183 HKAAVLQKMEASTTASLVYYALKHGLIN 210 >gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 210 Score = 83.6 bits (205), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 105/208 (50%), Gaps = 11/208 (5%) Query: 5 RLLIIDDHALFRCGLRLVLQAALPQATIS-EAGSLEDAMRAEDAQAPDMVLLDIQLGGLN 63 ++L++DDHA+ R G++ + A +P I EA + ++A+R AQ D+VLLDI + + Sbjct: 3 KILVVDDHAVVRAGVQYFI-AQVPDMKIEGEAATAQEAIRLVRAQDWDIVLLDINMPDKS 61 Query: 64 GIDGMAVLARKWPDVPIIILSADDTDGTVRAATQRGAAAFVSKAATAEHILQVLLEVAGG 123 G++ + + R+ P++P++ILS + GA+ +V K A AE ++ + + G Sbjct: 62 GVEVLKQIKREKPELPVLILSMHPESRYAVQILRSGASGYVQKEALAEELVNAIQTILRG 121 Query: 124 RHTLPTPSGQV------EASAKP---QFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIR 174 + ++ ++ KP + R+YE+ L QG I L LS T+ Sbjct: 122 HKYISHTVAELLTTELDTSTEKPLHETLSKREYEIFYKLCQGHGVTKIADELCLSVKTVS 181 Query: 175 GHVQAILAALEVDNRAEAAFAARRRGLV 202 + +L + ++N A + A ++ L+ Sbjct: 182 TYRARVLQKMNMENNAGIIYYAIKQNLI 209 >gi|152981504|ref|YP_001353304.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 231 Score = 72.0 bits (175), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 105/221 (47%), Gaps = 19/221 (8%) Query: 1 MPISRLLIIDDHALFRCGLRLVLQAALPQATISEAGSLEDAMRAEDAQAPDMVLLDIQLG 60 +PI ++I++D FR L V+Q A AG+ + + D++L+D+ L Sbjct: 11 LPI-HVVIVEDDPGFRAALSKVVQDAPDMHLSGSAGTRAEGLALLQGAPADVLLVDLGLP 69 Query: 61 GLNGIDGMAVLARKWPDVPIIILSADDTDGTVRAATQRGAAAFVSKAATAEHILQVLLEV 120 +GID + WP I++ + + V + + GAA ++ K ++ ++ + + Sbjct: 70 DGSGIDVIKAAVLLWPSCSIMVSTNFGDETHVMRSIESGAAGYLLKDSSPTRMIDEIRSI 129 Query: 121 A-GGRHTLPTPSGQVEASAKPQ-----------------FTPRQYEVLGLLSQGLTNKAI 162 A GG P + Q+ A + + R+ EVL +S+G T + I Sbjct: 130 ASGGSPISPIIARQILARFRTSAPVTTEEQAPAEDNSALLSTREREVLDFISKGFTTQEI 189 Query: 163 GRRLNLSENTIRGHVQAILAALEVDNRAEAAFAARRRGLVS 203 + + LS T+R V+ I + L+V ++AEA + AR +GL+S Sbjct: 190 AKLMQLSHFTVRTFVRRIYSKLKVTSKAEALYEARTQGLLS 230 >gi|152981499|ref|YP_001354599.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 248 Score = 67.8 bits (164), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 11/207 (5%) Query: 3 ISRLLIIDDHALFRCGLRLVLQAALPQATISEAGS---LEDAMRAEDAQAPDMVLLDIQL 59 +++++I +DH L R GLR ++ +++ GS +E+ ++ Q P +LL Sbjct: 46 MTKIVIAEDHTLIREGLRSLMAHVAGMEIVADTGSGAQVEELLQ----QTPTDLLLLDLD 101 Query: 60 G-GLNGIDGMAVLARKWPDVPIIILSADDTDGTVRAATQRGAAAFVSKAATAEHILQVLL 118 G +GI A + + P + I+IL+ +VR A GA ++ K + +L+ + Sbjct: 102 LPGCHGITLTARIKQSHPHIKILILTGSTDHNSVRQAFAAGADGYLLKLEDSSELLEAIP 161 Query: 119 EVAGGRHTLPT---PSGQVEASAKPQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRG 175 V R + P + S TPR+ ++L L++ G +++ I L LS T+R Sbjct: 162 TVLDNRRYVSKLLGPLTHFQDSEDQAVTPREQQILKLVAAGKSSQEIADTLELSVFTVRK 221 Query: 176 HVQAILAALEVDNRAEAAFAARRRGLV 202 H Q ++A L + N E A +GL+ Sbjct: 222 HKQNLMAKLSLHNAVELTRYAMHQGLL 248 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 429,134 Number of extensions: 16817 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 9 Length of query: 203 Length of database: 1,221,021 Length adjustment: 79 Effective length of query: 124 Effective length of database: 928,958 Effective search space: 115190792 Effective search space used: 115190792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)