BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1036.p
         (338 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980695|ref|YP_001352040.1| S-adenosylmethionine:tRNA ribos...   542   e-155

>gi|152980695|ref|YP_001352040.1| S-adenosylmethionine:tRNA
           ribosyltransferase-isomerase [Janthinobacterium sp.
           Marseille]
          Length = 341

 Score =  542 bits (1396), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 260/337 (77%), Positives = 293/337 (86%)

Query: 1   MYSLSDFDFALPPELIAQTPLAERSASRLLQVQGAQLSDRRFSDIVDLLQPGDLLVFNDT 60
           MYSLSDFDF LP ELIAQTPLAERSASRLLQV   Q++DR F+ IVDLL PGDLLVFNDT
Sbjct: 1   MYSLSDFDFELPQELIAQTPLAERSASRLLQVLPEQMTDRNFAYIVDLLSPGDLLVFNDT 60

Query: 61  RVIKARLFGVKETGGKIEALVERILDARTVHAQVRASKSPPPGTRIRLADAFDVTVGERF 120
           RV+KAR FG+KETGGK+E LVER++D R VHAQ+RASKSP  G RIRLADAFDV VGER 
Sbjct: 61  RVLKARFFGIKETGGKVEVLVERVIDQRNVHAQIRASKSPAVGMRIRLADAFDVIVGERA 120

Query: 121 GEFYTLHFPADAFDLLEQYGSLPLPPYIDHEADAYDETRYQTVYAKEPGAVAAPTAGLHF 180
           GEFY L FP D F+L+E +G LPLPPYI+H ADAYDETRYQTVYAK PGAVAAPTAGLHF
Sbjct: 121 GEFYELQFPDDVFELIEAHGRLPLPPYIEHAADAYDETRYQTVYAKTPGAVAAPTAGLHF 180

Query: 181 DQTLLEQLSARGVQQAFVTLHVGAGTFQPVRVEDLSQHQMHSEWYTIPPETVAAVRAAKA 240
           DQ LL+ L+A+GV+ A++TLHVGAGTFQPVR E+L++H MHSEWYTI  +TV  V+A + 
Sbjct: 181 DQALLDALTAKGVKLAYITLHVGAGTFQPVRNENLAEHNMHSEWYTISQQTVDLVKATQV 240

Query: 241 AGGRVVAVGTTSMRALESGSQSGELKAGSDDTQLFITPGYTFKTVDQLVTNFHLPKSTLL 300
           AGG +VAVGTTSMRALES SQSG L+AGS DT+LFITPGYTFKTV +L+TNFHLPKSTLL
Sbjct: 241 AGGNIVAVGTTSMRALESASQSGSLQAGSADTRLFITPGYTFKTVTRLITNFHLPKSTLL 300

Query: 301 MLVSAFAGYEHIRAAYAHAIAQKYRFFSYGDAMLLTR 337
           MLVSAFAGY+ IRAAY HAI+Q+YRFFSYGDAM LTR
Sbjct: 301 MLVSAFAGYDTIRAAYQHAISQRYRFFSYGDAMFLTR 337


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 761,196
Number of extensions: 30002
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 254
Effective length of database: 910,473
Effective search space: 231260142
Effective search space used: 231260142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)