BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1035.p (707 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980116|ref|YP_001352039.1| ATP-dependent DNA helicase RecG... 1054 0.0 gi|152980432|ref|YP_001353098.1| transcription-repair coupling f... 232 7e-62 >gi|152980116|ref|YP_001352039.1| ATP-dependent DNA helicase RecG [Janthinobacterium sp. Marseille] Length = 743 Score = 1054 bits (2725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 534/706 (75%), Positives = 595/706 (84%), Gaps = 8/706 (1%) Query: 10 MSATAKKPRQEASK-----KKSAP--AAKPENKLAKLGLHNDMDLVLHLPLRYEDETTLM 62 M KKP A K K +AP A K ++KL KLGL +DMD VLHLP+RYEDET + Sbjct: 38 MPVLKKKPATVAKKTSKTTKSAAPTRAEKIDDKLIKLGLRSDMDKVLHLPMRYEDETEIK 97 Query: 63 SIAQASLRGLQTVQVEGVVSACEVQFRPRRQLIVTIGDDSGQLTLRFLNFYGSQTKQLAE 122 SI++A ++VQVEGVV++CEV FRPRRQL+VTI DD+GQL +RFLNFYGSQ KQ+AE Sbjct: 98 SISEAGFIFGRSVQVEGVVTSCEVAFRPRRQLVVTISDDTGQLVMRFLNFYGSQVKQMAE 157 Query: 123 GTRVRVRGELRHGFFGAEMVHPSYKVVNEGAPLPDVLTPVYPAGEGLSQAYLRKAIANAM 182 G RVR RGE+RHGFFGAEMVHP+YK+V EGAPLP LTPVYPAGEGLSQ LRK I +AM Sbjct: 158 GNRVRARGEVRHGFFGAEMVHPNYKMVVEGAPLPAALTPVYPAGEGLSQTILRKTILDAM 217 Query: 183 NRLDWSDTLPPSMLETLNLAAFEPSVRLLHNPPPEVDEHALIEKSHPAWIRMKFDELLAQ 242 R++W DTL + L+L FEP+VRLLHNPPP++DE AL ++SH AW+RMKFDELLAQ Sbjct: 218 TRIEWRDTLNDKLRGELDLMPFEPAVRLLHNPPPDIDESALADRSHAAWVRMKFDELLAQ 277 Query: 243 QLSLKRAQAARRAKTARALPVSGRITEELTKILPFQLTGAQQRVLEEIRADLRQSFPMQR 302 QLS+KRAQ ARRAK A LP G++++ K LPF LTGAQQRVLEEIRADL+QSFPMQR Sbjct: 278 QLSMKRAQMARRAKGAAVLPSIGKLSKAFLKQLPFSLTGAQQRVLEEIRADLKQSFPMQR 337 Query: 303 LLQGDVGSGKTVVAALAAAQAIDSGCQAVLMAPTEILAEQHFRKIAAWMEPLDIGVAWLS 362 LLQGDVGSGKTVVAALAAAQAIDSG QAVLMAPTEILA+QHFRKIA WMEPL + VAWL+ Sbjct: 338 LLQGDVGSGKTVVAALAAAQAIDSGFQAVLMAPTEILADQHFRKIAGWMEPLGVNVAWLT 397 Query: 363 GSQKKKEKTEALAHIESGAARLVIGTHALIQDTVQFENLGLVIVDEQHRFGVGQRLALRN 422 GS KKKEK EA A IE+G A+L+IGTHALIQ+ VQF LGLVIVDEQHRFGVGQRL LRN Sbjct: 398 GSLKKKEKLEAKARIEAGTAQLIIGTHALIQEDVQFAKLGLVIVDEQHRFGVGQRLVLRN 457 Query: 423 KSF-NAADPDAAAVPHQLMMSATPIPRTLAMTYYADLEVSVIDELPPGRSPIVTRVIDQN 481 K N A +PHQLMMSATPIPRTLAMTYYADLEVSVIDELPPGR+PIVTRVIDQN Sbjct: 458 KGVDNNASAQQQTIPHQLMMSATPIPRTLAMTYYADLEVSVIDELPPGRTPIVTRVIDQN 517 Query: 482 RRDEVIQRVHAAALEGKQIYWVCPLIEESEALQLQTATDTHAALSAALPDLKIGLVHGRM 541 RRDEVI+RVHAAALEG+Q+YWVCPLIEESEALQLQTATDTH L ALPDL++GLVHGRM Sbjct: 518 RRDEVIERVHAAALEGRQVYWVCPLIEESEALQLQTATDTHQTLVEALPDLQVGLVHGRM 577 Query: 542 KPVEKQVVMEGFSRGAIHLLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGR 601 KP EKQ VM+ F+RG IH+LVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGR Sbjct: 578 KPAEKQQVMDAFTRGEIHVLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGR 637 Query: 602 GSAASVCLLLYQGPLGGTAKQRLATMRETTDGFEIARRDLDIRGPGEFLGARQSGEAMLR 661 GS ASVCLLLYQGPLG AKQRL MRE+TDGFEIAR+DL+IRGPGEFLGARQSG+AMLR Sbjct: 638 GSTASVCLLLYQGPLGMIAKQRLRIMRESTDGFEIARKDLEIRGPGEFLGARQSGQAMLR 697 Query: 662 FADLATDQWLVEKARDTAQALLQHAPDIVDRHLARWLGGREDFLKV 707 FADL TDQWLV++ARD AQ LL+ VD HLARWLG RED+LKV Sbjct: 698 FADLETDQWLVDRARDLAQTLLRDDMATVDAHLARWLGAREDYLKV 743 >gi|152980432|ref|YP_001353098.1| transcription-repair coupling factor [Janthinobacterium sp. Marseille] Length = 1147 Score = 232 bits (591), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 158/414 (38%), Positives = 223/414 (53%), Gaps = 28/414 (6%) Query: 252 ARRA-KTARALPVSGRITEELTKILPFQLTGAQQRVLEEIRADLRQSFPMQRLLQGDVGS 310 ARRA + + S E + F+ T Q + + D+ PM RL+ GDVG Sbjct: 577 ARRALREGHSFEYSAHDYEAFAESFGFEETADQAAAINAVIKDMTSGKPMDRLICGDVGF 636 Query: 311 GKTVVAALAAAQAIDSGCQAVLMAPTEILAEQHFRKIAAWMEPLDIGVAWLSGSQKKKEK 370 GKT VA AA A+ G Q ++APT +LAEQH + A + +A LS + KE Sbjct: 637 GKTEVALRAAFVAVLGGKQVAILAPTTLLAEQHAQTFADRFADWPVRIAELSRFRTAKEV 696 Query: 371 TEALAHIESGAARLVIGTHALIQDTVQFENLGLVIVDEQHRFGVGQRLALRNKSFNAADP 430 T+A+ + G +VIGTH L+ ++F LGLVI+DE+HRFGV Q+ AL+ A+ Sbjct: 697 TQAIKGMADGTIDIVIGTHKLLSGDIKFSRLGLVIIDEEHRFGVRQKEALKALR---AEV 753 Query: 431 DAAAVPHQLMMSATPIPRTLAMTYYADLEVSVIDELPPGRSPIVTRVIDQNRRDEVIQRV 490 D L ++ATPIPRTL M + S+I P R I T V +N D VI+ Sbjct: 754 DV------LTLTATPIPRTLGMALEGLRDFSIIATAPQKRLAIKTFVRSEN--DSVIREA 805 Query: 491 HAAALE-GKQIYWVCPLIEESEALQLQTATDTHAALSAALPDLKIGLVHGRMKPVEKQVV 549 L+ G Q+Y+ L E E +Q + A L +P+ +IG+ HG++ + + + Sbjct: 806 CLRELKRGGQVYF---LHNEVETIQ-----NRKAMLEELMPEARIGVAHGQLHERDLERI 857 Query: 550 MEGFSRGAIHLLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSAASVCL 609 M F ++L+ TT+IE G+DVP A+ +++ A++FGL+QLHQLRGRVGR + Sbjct: 858 MRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAY 917 Query: 610 LL---YQGPLGGTAKQRLAT---MRETTDGFEIARRDLDIRGPGEFLGARQSGE 657 LL QG L A++RL M E GF +A DL+IRG GE LG QSGE Sbjct: 918 LLVHDVQG-LSKLAQRRLDAIQQMEELGSGFYLAMHDLEIRGAGEVLGDNQSGE 970 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,530,850 Number of extensions: 61517 Number of successful extensions: 209 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 206 Number of HSP's successfully gapped: 2 Length of query: 707 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 617 Effective length of database: 888,291 Effective search space: 548075547 Effective search space used: 548075547 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)