BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1034.p
         (231 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981740|ref|YP_001353552.1| hypothetical protein mma_1862 [...   193   6e-51

>gi|152981740|ref|YP_001353552.1| hypothetical protein mma_1862
           [Janthinobacterium sp. Marseille]
          Length = 210

 Score =  193 bits (491), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 113/213 (53%), Positives = 139/213 (65%), Gaps = 8/213 (3%)

Query: 12  TSRRLLCPICQRALTACICHWTSPIDHAIDVLILQHPLEVSNAKNSVRLLHLSLPYSKLV 71
            ++R  C  C RA +ACICHW +P++H ++VL LQHPLEV+N KNS RLLHLSLP+S+L 
Sbjct: 4   AAKRPSCSRCLRAQSACICHWITPVEHQVEVLFLQHPLEVANVKNSARLLHLSLPHSRLA 63

Query: 72  VGSVFEPEQLHTLLHAPSRLRNVPDSETVHPVLLYTDDASTAETTYFDARTMRVEEQEPL 131
           VG  F  ++L  LL+A            V P+LLY D +    T    A      E   +
Sbjct: 64  VGEAFGEDELRRLLYAGFDGAGT----AVQPILLYPDTS----TDSLLALPPPWPETTDV 115

Query: 132 KRIRLVVLDGTWRKSRKMLFENPLLQTLPRMMLIDTPTSRYTIRKSHKPEQLATLEATGY 191
              RLVVLDGTWRKSRKML+ NPLLQ LPR+ L D P S Y IRK+HKP+QL++ EAT +
Sbjct: 116 GAYRLVVLDGTWRKSRKMLYLNPLLQQLPRLPLADPPASVYAIRKAHKPDQLSSFEATCH 175

Query: 192 ALMQLERNSEKYHPLLTAFDNFVLQQGYMRMHA 224
           ALMQLE +S+KY PLL AFD FV QQ   R  A
Sbjct: 176 ALMQLENDSDKYVPLLDAFDGFVAQQQAYRPKA 208


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 498,667
Number of extensions: 18471
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 151
Effective length of database: 925,261
Effective search space: 139714411
Effective search space used: 139714411
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)