BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1033.p
         (105 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982055|ref|YP_001352317.1| hypothetical protein mma_0627 [...   134   1e-33

>gi|152982055|ref|YP_001352317.1| hypothetical protein mma_0627
           [Janthinobacterium sp. Marseille]
          Length = 103

 Score =  134 bits (336), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 80/102 (78%)

Query: 4   IQIQAMIMGQSYTLACQEGEQAALHHAVAYLDQKMRAIRDAGRIKGTDRIAVMAGLGIAA 63
           IQ+   IMGQ Y LAC+EGE+ AL  AVAYLD KM AIRDAG++KG DRIAVMA LGIAA
Sbjct: 2   IQLDVSIMGQPYKLACKEGEEGALQEAVAYLDGKMSAIRDAGKLKGNDRIAVMAALGIAA 61

Query: 64  ELLSMQRSEGPFAGMTIAQWQQQIAAITEVVDQALAPQEKLF 105
           ELL+ +  +GP + M++++ +Q+IAA+ E +D ALAPQE LF
Sbjct: 62  ELLATKSPDGPLSEMSMSEVKQKIAAMHETLDTALAPQENLF 103


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.130    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 192,663
Number of extensions: 6405
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 1,221,021
Length adjustment: 70
Effective length of query: 35
Effective length of database: 962,231
Effective search space: 33678085
Effective search space used: 33678085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 122 (51.6 bits)