BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1030.p (250 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981275|ref|YP_001354152.1| short-chain alcohol dehydrogena... 370 e-104 gi|152982805|ref|YP_001352936.1| short chain dehydrogenase [Jant... 96 3e-21 gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Jant... 92 3e-20 gi|152982575|ref|YP_001354778.1| short-chain dehydrogenase/reduc... 86 2e-18 gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Jant... 83 2e-17 >gi|152981275|ref|YP_001354152.1| short-chain alcohol dehydrogenase [Janthinobacterium sp. Marseille] Length = 248 Score = 370 bits (949), Expect = e-104, Method: Compositional matrix adjust. Identities = 179/248 (72%), Positives = 206/248 (83%), Gaps = 2/248 (0%) Query: 1 MVVLITGATAGFGAAMARKFAGNGHQVIAAGRRKERLDDLVKELGADKVLPLVLDVTSKD 60 M+VL+TGAT+GFGA MARKFA +GH+VIA GRR++RLD L E+G VL + +DVT K+ Sbjct: 1 MIVLVTGATSGFGAEMARKFAQHGHKVIATGRRQDRLDALAAEIG-PSVLTVAMDVTDKE 59 Query: 61 SINAGLASLSGQWKEVDVLINNAGLALGLGPAHEVALSDWETMIDTNVKGLVTITHALLP 120 SI A LA L +WKE+DVLINNAGLALG+ PA +L WETMI+TN KGLVT+T LLP Sbjct: 60 SIAAALAGLPPEWKEIDVLINNAGLALGVAPAQSASLEQWETMIETNCKGLVTVTRLLLP 119 Query: 121 EMVKRGRGTIINLGSVAGAYPYPGGNVYGATKAFVDQFTLNLRADLVGTGVRATNLAPGL 180 EM+KR RGTIIN+ S AGAY YPG NVYGATKAFVDQFT NLRADLVGTGVRA+N+APGL Sbjct: 120 EMLKRNRGTIINISSSAGAYAYPGANVYGATKAFVDQFTRNLRADLVGTGVRASNIAPGL 179 Query: 181 CGGTEFSNVRFKGDDGAAAKVYEGTTPLTAEDIAEAAFWVATMPAHVNINYMELMPTCQG 240 GGTEFSNVR K DD AAAKVYEGTTPL+ DIAE A+W+AT+PAHVNIN++ELMPTCQG Sbjct: 180 AGGTEFSNVRLK-DDAAAAKVYEGTTPLSPADIAETAYWIATLPAHVNINHIELMPTCQG 238 Query: 241 FSPFNIKR 248 F P IKR Sbjct: 239 FGPLFIKR 246 >gi|152982805|ref|YP_001352936.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 282 Score = 95.5 bits (236), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 92/179 (51%), Gaps = 2/179 (1%) Query: 1 MVVLITGATAGFGAAMARKFAGNGHQVIAAGRRKERLDDLVKELGADKVLPLVLDVTSKD 60 M +LITG ++GFG A A GH VI R D ++L + + +VLDVT Sbjct: 7 MNLLITGVSSGFGRAFAETALREGHTVIGTVRNDAAKRDF-EDLAIGRAIGVVLDVTDFS 65 Query: 61 SINAGLASLSGQWKEVDVLINNAGLALGLGPAHEVALSDWETMIDTNVKGLVTITHALLP 120 +I+A +AS S + VDVL+NNAG G E L + D NV G V + A+LP Sbjct: 66 AIDAAVASASSKVGPVDVLVNNAGYG-HEGILEESPLEEMRHQFDVNVFGAVAMIKAVLP 124 Query: 121 EMVKRGRGTIINLGSVAGAYPYPGGNVYGATKAFVDQFTLNLRADLVGTGVRATNLAPG 179 M R G IIN+ S+ G PG Y +K ++ + L ++ G G++ T +APG Sbjct: 125 SMRARRTGHIINITSMGGFITMPGIAYYCGSKFALEGISETLAKEVAGFGIKVTAVAPG 183 >gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 272 Score = 92.4 bits (228), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 104/205 (50%), Gaps = 14/205 (6%) Query: 2 VVLITGATAGFGAAMARKFAGNGHQVIAAGRRKERLDDLVKEL----GADKVLPLVLDVT 57 V L+TGA++G GA A+ A G QVI A RR +RL +L E+ GA +V+ LDVT Sbjct: 25 VALVTGASSGLGARFAKVLAMAGAQVILASRRVDRLKELRAEIEAEGGAAQVVS--LDVT 82 Query: 58 SKDSINAGLASLSGQWKEVDVLINNAGLALGLGPAHEVALSDWETMIDTNVKGLVTITHA 117 SI + +A + +D+L+NN+G++ +V D+ M+DTN +G + Sbjct: 83 DYASIKSAIAHAETETGAIDILVNNSGVSASQRLV-DVTPEDYAHMMDTNQRGAFFVAQE 141 Query: 118 LLPEMVKRGRG------TIINLGSVAGAYPYPGGNVYGATKAFVDQFTLNLRADLVGTGV 171 + M+ R +G IIN+GSVAG P +Y +KA V T + + G+ Sbjct: 142 VAKRMIARHKGDPKKQHRIINIGSVAGLRVVPELGLYCMSKAAVVHMTKAMAVEWGKFGI 201 Query: 172 RATNLAPGLCGGTEFSNVRFKGDDG 196 + PG GTE + F+ + G Sbjct: 202 NTNAICPGYI-GTEMNLDYFQSEQG 225 >gi|152982575|ref|YP_001354778.1| short-chain dehydrogenase/reductase SDR [Janthinobacterium sp. Marseille] Length = 248 Score = 86.3 bits (212), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 92/186 (49%), Gaps = 9/186 (4%) Query: 3 VLITGATAGFGAAMARKFAGNGHQVIAAGRRKERLDDLVKELGADKVLPLVLDVTSKDSI 62 VLITG ++GFG +A+ F + +VIA R D++ + ++LPL DVT SI Sbjct: 4 VLITGCSSGFGLEIAKYFLEHNWKVIATMRTPRA--DVLPQSEHLRILPL--DVTDASSI 59 Query: 63 NAGLASLSGQWKEVDVLINNAGLALGLGPAHEVALSDWETMIDTNVKGLVTITHALLPEM 122 + +D L+NNAG+ + LGP + + +TN G + +T ALLP+ Sbjct: 60 RRAVEEAG----PIDALVNNAGVGM-LGPFESTTMDAVREVFETNTFGTMAMTQALLPQF 114 Query: 123 VKRGRGTIINLGSVAGAYPYPGGNVYGATKAFVDQFTLNLRADLVGTGVRATNLAPGLCG 182 R G I+N+ S P VY A+KA + FT +L +L +R + PG+ Sbjct: 115 RARKSGVIVNVASSVTLKALPLLPVYTASKAAIVAFTASLALELQEFNIRVGTVLPGMAP 174 Query: 183 GTEFSN 188 T F+ Sbjct: 175 ETAFAT 180 >gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 278 Score = 82.8 bits (203), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 10/227 (4%) Query: 3 VLITGATAGFGAAMARKFAGNGHQVIAAGRRKERLDDLVKELGA--DKVLPLVLDVTSKD 60 VLITGA G G A A FA G++V +GRR+E + L EL A ++ L+ DV + Sbjct: 35 VLITGALTGIGRATAFAFAREGYRVAVSGRREEAGNALAAELRALGNEAEFLLADVRFEA 94 Query: 61 SINAGLASLSGQWKEVDVLINNAGLALGLGPAHEVALSDWETMIDTNVKG-LVTITHALL 119 + + ++ +DV +NNAG L P E + +++ NV G ++++ H + Sbjct: 95 DVRNLVEQTVVRFGRIDVAVNNAGTEGQLAPIVEQSAANYAETFGVNVLGTMLSLKHEMR 154 Query: 120 PEMVKRGRGTIINLGSVAGAYPYPGGNVYGATKAFVDQFTLNLRADLVGTGVRATNLAPG 179 M+ +G G+IINL SVAG G +VY A+K V+ T + + GVR +APG Sbjct: 155 V-MLAQGSGSIINLSSVAGKVGIAGASVYVASKHAVEGLTKSAALEGAAAGVRVNAVAPG 213 Query: 180 LCGGTEFSNVRFKGDDGAAAKVYEGTTP----LTAEDIAEAAFWVAT 222 TE + RF G + T P T ++IA+ ++A+ Sbjct: 214 PV-ATEMLD-RFVGGSEENKAGFLATIPAGRAATPDEIAQTIVFLAS 258 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 570,103 Number of extensions: 23960 Number of successful extensions: 115 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 90 Number of HSP's successfully gapped: 22 Length of query: 250 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 169 Effective length of database: 921,564 Effective search space: 155744316 Effective search space used: 155744316 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)