BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1028.p (234 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980246|ref|YP_001354154.1| biopolymer transport protein [J... 381 e-107 gi|152981657|ref|YP_001354583.1| MotA/TolQ/ExbB proton channel f... 97 8e-22 gi|152981614|ref|YP_001352054.1| biopolymer transport protein Ex... 88 5e-19 gi|152981708|ref|YP_001351935.1| biopolymer transport protein Ex... 88 6e-19 gi|152980817|ref|YP_001354069.1| ExbB transport protein [Janthin... 70 1e-13 >gi|152980246|ref|YP_001354154.1| biopolymer transport protein [Janthinobacterium sp. Marseille] Length = 230 Score = 381 bits (979), Expect = e-107, Method: Compositional matrix adjust. Identities = 195/239 (81%), Positives = 204/239 (85%), Gaps = 14/239 (5%) Query: 1 MNVTQDLSFISLIANASVLVQLVMLLLLSASVTSWTYIFRKMFTIRSARVQTEEFERVFW 60 M VTQDLSF+ LI NASVLVQLVM LLL SV SWTYIFRKMF I++AR QTEEFER FW Sbjct: 1 MTVTQDLSFVHLITNASVLVQLVMALLLGVSVMSWTYIFRKMFAIKNARAQTEEFERAFW 60 Query: 61 SGGNLSALYQDALSNRRKAGGEGGALERIFQAGMGEFTKAKAS-----VAARGGAVDPGL 115 SGG+L+ LY +A SNRRK G GALERIF+AGM EF KAK S V+AR Sbjct: 61 SGGDLNTLYLEASSNRRKNNGSTGALERIFEAGMSEFNKAKGSNDSFHVSAR-------- 112 Query: 116 LLDGARRAMRAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQAT 175 LDGARRAMRAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQAT Sbjct: 113 -LDGARRAMRAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQAT 171 Query: 176 LAAVAPGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAIRFESFIEEFSNILQRQAR 234 LAAVAPGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAIRFESF+EEFSNILQRQ R Sbjct: 172 LAAVAPGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAIRFESFVEEFSNILQRQTR 230 >gi|152981657|ref|YP_001354583.1| MotA/TolQ/ExbB proton channel family protein [Janthinobacterium sp. Marseille] Length = 230 Score = 97.1 bits (240), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 112/238 (47%), Gaps = 15/238 (6%) Query: 1 MNVT---QDLSFISLIANASVLVQLVMLLLLSASVTSWTYIFRKMFTIRSARVQTEEFER 57 MN T Q L A + V +LL S+ SW YI K ++ R + Sbjct: 1 MNSTAADQGLGLAHYWAQGDAVSHSVAYVLLIMSILSWYYILSKAWSSWRIRKSAAALDG 60 Query: 58 VFWSGGNLSALYQDALSNRRKAGGEGGALERIFQAGMGEFTKAKASVAARGGAVDPGLLL 117 FW L+ DA++ R++ E + A E K + DPG L+ Sbjct: 61 -FWQAPTLT----DAIATIRRSDSEN--VYTPLAAQSVEAANIKPHANSLNANTDPGELI 113 Query: 118 DGARRAMRAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLA 177 R +R R LE+ L LASVGS +P++GLFGTVWGI +A +++ + Sbjct: 114 ---TRTLRQEINRVSSRLETGLTLLASVGSTAPFIGLFGTVWGIYHALVAVSSSGTIQID 170 Query: 178 AVAPGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAI-RFESFIEEFSNILQRQAR 234 VA + EALI TA+GL AIPAV+AYN ++ ++R+ + ++F + L AR Sbjct: 171 KVAGPVGEALIMTALGLAVAIPAVLAYNAFTR-VNRVTLAELDAFAHDLHAYLTTGAR 227 >gi|152981614|ref|YP_001352054.1| biopolymer transport protein ExbB [Janthinobacterium sp. Marseille] Length = 242 Score = 87.8 bits (216), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/199 (34%), Positives = 96/199 (48%), Gaps = 19/199 (9%) Query: 11 SLIANASVLVQLVMLLLLSASVTSWTYIFRKMFTI----RSARVQTEEFERVFWSGGNLS 66 SL + + + V +LL++ S+ SW I K + R+AR EF W Sbjct: 10 SLWSQGDFVTKGVAVLLVAMSIASWYVIATKALQLMQYRRAARAAGHEF----WD----- 60 Query: 67 ALYQDALSNRRKAGGEGGALERIFQAGMGEFTKAKASVAARGGAVDPGLLLDGARRAMRA 126 +L+ G G I +AG+ T + A +G D + D ++R Sbjct: 61 ---ATSLTEGTATLGNGNPFADIAEAGV---TAMRHHEAHKGHLHDQLSVSDWITLSLRQ 114 Query: 127 AYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVAPGIAEA 186 A L+S +A LASVGS +P+VGLFGTVWGI +A + QA++ VA + EA Sbjct: 115 AIDETSAKLQSGMAVLASVGSTAPFVGLFGTVWGIYHALVAIGTSGQASIDKVAGPVGEA 174 Query: 187 LIATAIGLFAAIPAVVAYN 205 LI TA+GL AIPA YN Sbjct: 175 LIMTALGLAVAIPATFGYN 193 >gi|152981708|ref|YP_001351935.1| biopolymer transport protein ExbB [Janthinobacterium sp. Marseille] Length = 279 Score = 87.8 bits (216), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 96/202 (47%), Gaps = 26/202 (12%) Query: 10 ISLIANASVLV-QLVMLLLLSASVTSWTYIFRKMFTIRSARVQTEEFERVFWSGGNLSAL 68 IS + N S V + +L+LL S+ SW I K+ R Q + ER FW G + Sbjct: 65 ISALWNGSDFVAKGTLLILLLFSIGSWYIIVAKLLAQRKLHKQARDTERTFWDAGTVRQ- 123 Query: 69 YQDALSNRRKAGGEGGALERIFQAGMGEFTKAKASVAARGGAVDPGLLLD-----GARRA 123 L+ + F ++A + GLL ++ Sbjct: 124 ----------------GLDTLESGTPFHFI---GTLALKATEHHSGLLAHVDFNTWVVQS 164 Query: 124 MRAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVAPGI 183 + ++ + L+ LAFLA+VGS +P+VGLFGTVWGI +A + QA++ VA + Sbjct: 165 LHSSVDTVKNRLQDGLAFLATVGSTAPFVGLFGTVWGIYHALTAIGLSGQASIDKVAGPV 224 Query: 184 AEALIATAIGLFAAIPAVVAYN 205 EALI TAIGL A+PAV+ YN Sbjct: 225 GEALIMTAIGLAVAVPAVLGYN 246 >gi|152980817|ref|YP_001354069.1| ExbB transport protein [Janthinobacterium sp. Marseille] Length = 591 Score = 69.7 bits (169), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 63/120 (52%), Gaps = 6/120 (5%) Query: 121 RRAMRAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVA 180 R AM RE + + + +L++ +PYVGLFGTV GIM F A + +VA Sbjct: 466 RAAMDGVMVRENERMSHRMNWLSTAIEGAPYVGLFGTVIGIMLVFVVAAMAGAVDINSVA 525 Query: 181 PGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAIRFESFIEEFSNILQ------RQAR 234 PG+A AL+ TA GL AIPA+ YN + D + F++EF+ L RQAR Sbjct: 526 PGMAAALLCTAAGLGVAIPALFGYNWLASRSDAIGADMAVFVDEFATRLAEEQGEGRQAR 585 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 477,089 Number of extensions: 19571 Number of successful extensions: 113 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 112 Number of HSP's successfully gapped: 6 Length of query: 234 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 154 Effective length of database: 925,261 Effective search space: 142490194 Effective search space used: 142490194 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)