BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1026.p
         (330 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982653|ref|YP_001354156.1| TolA-related transport transmem...   202   2e-53

>gi|152982653|ref|YP_001354156.1| TolA-related transport
           transmembrane protein [Janthinobacterium sp. Marseille]
          Length = 292

 Score =  202 bits (514), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/338 (43%), Positives = 199/338 (58%), Gaps = 54/338 (15%)

Query: 1   MSDNAHYTIPKAPGRWRAITLALVMHVALFLFFWIGIRWQSETPLTVEAEIWDPQYK--- 57
           M+D   Y++PK PGRWRAITLA  +H AL +FFWIGI WQ+ETP+ V+AEIWD Q K   
Sbjct: 1   MTDTTPYSVPKEPGRWRAITLAAAVHAALLVFFWIGIDWQNETPVAVQAEIWDMQAKEAA 60

Query: 58  --EAAPLPTPPQPEPQPVVVEPPPQPQPQPEPKPIPPKVIDEPKVEKPDIALQKEKEKKR 115
                P PTP        +++  P+ +P   P P            K DIAL++EK++K 
Sbjct: 61  PLPPEPEPTPQPKPEPKPIIKETPKAEPVEPPAP------------KVDIALEREKKRKE 108

Query: 116 KEEQEKQQKLEQEKAEKAKAEKDKADKLKAEKEKAEKEQAEREKKEKLEADKQKKLKEEK 175
           +E ++K  + E+EK  K +AE+DK  KL  +K+ A+K+ AE+++K  LE           
Sbjct: 109 QERKDKLAEEEKEKKLKQQAEQDKQQKL--DKQAADKKAAEQQQKADLE----------- 155

Query: 176 QKEEEAKKKADAEKQAADKKKQQQAAADAKAAEQRRQEDLKRMMGQATSATGGTGTAAKS 235
                              KK++Q AADA   ++ R E+++R+ G   S  GGTG AAKS
Sbjct: 156 -------------------KKRKQEAADAAVRDKIRAEEMRRLTGAVGS--GGTGEAAKS 194

Query: 236 QGP-KGSPDYANRLGAKIKGNTTFDN-AGVSGNPAGEYTVELFPDGTVRSV-RVNKPSGV 292
           QG  +    YA+++ AKI+ NTTF    G+SGNPA E+ VEL PDG++R   R+ K SGV
Sbjct: 195 QGSGRADSGYADKIRAKIRQNTTFIVPDGLSGNPAAEFDVELLPDGSLRGEPRLRKSSGV 254

Query: 293 PGFDEAVRTAVMKSQPFPADKDGKVPSSFTFTHYPKDQ 330
            GFD+AV+ A+ +SQPFP DK G VPS F   H PKDQ
Sbjct: 255 TGFDDAVKRAIERSQPFPPDKSGTVPSRFIVVHKPKDQ 292


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.306    0.125    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 466,246
Number of extensions: 16970
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 246
Effective length of database: 910,473
Effective search space: 223976358
Effective search space used: 223976358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 130 (54.7 bits)