BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1025.p
         (430 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980804|ref|YP_001354157.1| periplasmic component of the To...   649   0.0  

>gi|152980804|ref|YP_001354157.1| periplasmic component of the Tol
           biopolymer transport system [Janthinobacterium sp.
           Marseille]
          Length = 423

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/430 (71%), Positives = 372/430 (86%), Gaps = 7/430 (1%)

Query: 1   MIKARYLTLTRLAAATVAVAGLSFAPASQAQIRFEITGVGASQIPVAITAFPGEESAPQQ 60
           MIK  +L        + AV  L     + AQ+R EI GVGA+QIPVAI AF  E  APQQ
Sbjct: 1   MIKTTFLR-------SFAVMALFITTLAHAQLRVEIAGVGANQIPVAIAAFGDETLAPQQ 53

Query: 61  ISPVVKADLARSGIFKLIDNGDALSDSSAINYADWQKRGANALAVGSVTRLADGRFDVRY 120
           +S ++KADL RSG FK+ID G  L+++S +N ADW+ RGA+A+ VGSV +LADGR++VRY
Sbjct: 54  VSAIIKADLLRSGFFKIIDTGGVLTENSQLNLADWKSRGADAIVVGSVLKLADGRYEVRY 113

Query: 121 RLFDTVQSTQLSALSISAQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGNEYR 180
           RLFDTV+ TQLS+L++++QPQ LR++AHK+ADD+Y+KLTGI G F+TRI+YVTKS  E+R
Sbjct: 114 RLFDTVKGTQLSSLALASQPQFLRVSAHKVADDVYEKLTGIKGAFATRIAYVTKSPKEFR 173

Query: 181 LEVADADGEGTQVALRSNEPIISPAWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIVAN 240
           LE+AD+DGEGTQVALRSNEPIISP+WSPDGTKVAYVSFE KKPVVYIQ+LV+R+R++ AN
Sbjct: 174 LEIADSDGEGTQVALRSNEPIISPSWSPDGTKVAYVSFENKKPVVYIQDLVSRKRTVAAN 233

Query: 241 FKGSNSAPAWSPDGSRLAVALTRDGLTQVYLINADGSGLRRLTNSAGIDTEPQFSPDGGS 300
           FKGSNSAP+W+PDG+RLAVAL+RDGLTQVY++NADG+GLRRL++S GIDTEPQFS DG S
Sbjct: 234 FKGSNSAPSWAPDGNRLAVALSRDGLTQVYVVNADGTGLRRLSSSNGIDTEPQFSADGQS 293

Query: 301 IYFTSDRSGGPQIYKVGLDGGTPQRVTFNGSYNISPRISPDGKTLAFISRRDGLFQLYAL 360
           I+FTSDRSGGPQIYK+G +GG  +RVTF+GSYNISPRISPDGK LA+ISRR+G FQL+ L
Sbjct: 294 IFFTSDRSGGPQIYKMGANGGEARRVTFSGSYNISPRISPDGKYLAYISRREGKFQLFLL 353

Query: 361 DLTNGQEIRLSDGSRDQSPSFAPNGKYIMYATESGRRGSLAVVSTDGRIKQRLTTQAGDI 420
           DLTNGQE RLSD  +D+SPSF+PNGKY+MYATESGRRG+LAVVS DG++KQRLTTQAGDI
Sbjct: 354 DLTNGQEQRLSDTVKDESPSFSPNGKYLMYATESGRRGTLAVVSVDGQVKQRLTTQAGDI 413

Query: 421 REPTWGPFMK 430
           REPTWGPFMK
Sbjct: 414 REPTWGPFMK 423


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,016,607
Number of extensions: 45847
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 344
Effective length of database: 903,079
Effective search space: 310659176
Effective search space used: 310659176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)