BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1024.p
         (174 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980803|ref|YP_001354158.1| peptidoglycan-associated lipopr...   253   5e-69

>gi|152980803|ref|YP_001354158.1| peptidoglycan-associated
           lipoprotein [Janthinobacterium sp. Marseille]
          Length = 169

 Score =  253 bits (646), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 122/166 (73%), Positives = 143/166 (86%), Gaps = 1/166 (0%)

Query: 8   TFALIVSSAVLLAACSSTKLDDKANAPVQTGASNGADTRAVNTVNAGSVDPLNDPQGVLA 67
           T   I+SSA+L+AACSSTKLDDKA    +TG+S  AD R+V TVNA S DPLNDPQGVLA
Sbjct: 5   TSVFILSSALLMAACSSTKLDDKAPVEDRTGSSAAADPRSVGTVNASS-DPLNDPQGVLA 63

Query: 68  KRSVYFDYDSYTVKPEYRTVIENHAKYLVAHKDRKVVIQGNTDDRGGAEYNLALGQKRAE 127
           KRS+YFD+DSY VKPE++ V+ENHAKYL +++ RK++IQGNTDDRGGAEYNLALGQKRAE
Sbjct: 64  KRSIYFDFDSYIVKPEFQQVVENHAKYLKSNQGRKIIIQGNTDDRGGAEYNLALGQKRAE 123

Query: 128 AVRKALILLGVSDAQVEAVSFGKEKPKALGQDEASYAENRRADIAY 173
           AVRK+L LLGV + Q+EAVS GKEKPKALG DEA++AENRRADI Y
Sbjct: 124 AVRKSLSLLGVPETQMEAVSLGKEKPKALGSDEAAWAENRRADIVY 169


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.313    0.128    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 361,095
Number of extensions: 14214
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 2
Length of query: 174
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 97
Effective length of database: 936,352
Effective search space: 90826144
Effective search space used: 90826144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)