BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1023.p
         (251 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981712|ref|YP_001354159.1| Tol-Pal cell envelope complex s...   322   1e-89

>gi|152981712|ref|YP_001354159.1| Tol-Pal cell envelope complex
           subunit YbgF [Janthinobacterium sp. Marseille]
          Length = 243

 Score =  322 bits (826), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 157/245 (64%), Positives = 196/245 (80%), Gaps = 3/245 (1%)

Query: 7   LKSVTVAAMLAATAFLPLTARAGLFDDDEARKAILDIRSKIEALQRDVGNKADKNSVLTL 66
           +K   +AA++AA +   L+A A LF DDEARKAI+++R K++ +Q+   +KA+ ++VL+L
Sbjct: 2   IKKTLIAALMAAFSCASLSAHAALFGDDEARKAIIELRGKVDGIQQ---SKAETSAVLSL 58

Query: 67  SDRNDNLQSQIAALRGQIEVLTNEITNAQQRQKDFYVDLDARLRKLEPQQVQVDGQTVAV 126
           S++N+ L+ +I+ L GQIEVL+NE+ N QQRQKDFYVDLD RLRKLEPQ V VDG+   V
Sbjct: 59  SNQNEALKQEISRLNGQIEVLSNEVQNLQQRQKDFYVDLDNRLRKLEPQVVAVDGKDAMV 118

Query: 127 GVSEQQAYDAALSQFKGGDYKGAANAFADFLKRYPQSGYAPSAQYWQGNSLYAQRDYKGA 186
           G SEQ AYD+AL+ FK GDYK +  AF DF++RYP+S YAPSAQYW GN+ YAQRDYK A
Sbjct: 119 GQSEQSAYDSALALFKAGDYKKSGTAFGDFVQRYPESAYAPSAQYWIGNAYYAQRDYKNA 178

Query: 187 IAAQQVVVKNYPDNPKAADALLNIASSQAELKDKAGAKKTLEQLIAKYPNTPAAQTGKER 246
           I AQQ ++K YPDNPKAADALLNIASSQ ELKD+A AKKTLE L+AKYPN PAAQT KER
Sbjct: 179 ITAQQALLKKYPDNPKAADALLNIASSQTELKDRAAAKKTLESLVAKYPNAPAAQTAKER 238

Query: 247 MASLK 251
           +AS K
Sbjct: 239 LASFK 243


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.313    0.127    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 527,683
Number of extensions: 20426
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 170
Effective length of database: 921,564
Effective search space: 156665880
Effective search space used: 156665880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 128 (53.9 bits)