BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1013.p
         (152 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982440|ref|YP_001354868.1| hypothetical protein mma_3178 [...   130   4e-32

>gi|152982440|ref|YP_001354868.1| hypothetical protein mma_3178
           [Janthinobacterium sp. Marseille]
          Length = 136

 Score =  130 bits (327), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 82/123 (66%), Gaps = 3/123 (2%)

Query: 25  RAWIVLQNVQEVETWIDTYNRELQAVVFRHKMNTVNAGQGICFTLELGGQIYLHTTPEGQ 84
           R WIVL+   +VE WID  NR +Q ++   K N  ++G GICF L  GG+IYLHTT EG 
Sbjct: 16  RPWIVLKTTYDVEAWIDHQNRNIQYLI---KNNNKSSGWGICFGLTEGGEIYLHTTSEGD 72

Query: 85  ILLDVSEEAAWAAPVISAAANVAAPAGSVWVLPPDTLTQLILGLSGLIATSQFVLRHEYR 144
           +LLDV+ EA W AP+I+A   V AP   +W LP D LTQL+LGLS L+A+++ V  H + 
Sbjct: 73  VLLDVTPEAEWVAPLITAVTQVEAPRAQIWALPGDKLTQLVLGLSPLLASTRLVTDHSFN 132

Query: 145 LGK 147
           L K
Sbjct: 133 LKK 135


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 336,964
Number of extensions: 10999
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 77
Effective length of database: 943,746
Effective search space: 72668442
Effective search space used: 72668442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)