BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1010.p (270 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 453 e-129 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 225 3e-60 gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPa... 188 3e-49 gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bica... 170 7e-44 gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport sys... 166 1e-42 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 453 bits (1166), Expect = e-129, Method: Compositional matrix adjust. Identities = 214/266 (80%), Positives = 238/266 (89%) Query: 1 MDNLNGKFIDIHGVEMVFHTKKGAFHALREINLTVAKGQFVTLIGHSGCGKSTLLNLIAG 60 MD++N KFIDI EM F TKKG F+AL +NLTV+KG+F+TLIGHSGCGKSTLLNLIAG Sbjct: 1 MDSINSKFIDIQHAEMSFSTKKGIFNALTNVNLTVSKGEFITLIGHSGCGKSTLLNLIAG 60 Query: 61 LLQPSEGVLLCANREIGGPAPERAVVFQNHSLLPWLTCYENIYLGVERVFGASENRTQLR 120 L Q + G+LLC NREI GP+PERAVVFQNHSLLPWLTCYEN+YL VERVF A+E++ +L+ Sbjct: 61 LTQATGGMLLCGNREIAGPSPERAVVFQNHSLLPWLTCYENVYLAVERVFSATESKAELK 120 Query: 121 DRTRAALALVGLTAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAH 180 RTRAALALVGL+ AE KRPNEISGGMKQRVGIARAL+MEPKVLLMDEPFGALDALTRAH Sbjct: 121 ARTRAALALVGLSHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAH 180 Query: 181 LQDELLKIVAKTESTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEVLEVNLARPRDRVM 240 LQDELLKIVA T STVVMVTHDVDEAVLLSDRIVM+TNGP+ATIGE+LEV LARPR+RVM Sbjct: 181 LQDELLKIVAATGSTVVMVTHDVDEAVLLSDRIVMLTNGPSATIGEILEVKLARPRERVM 240 Query: 241 LAQDAQYGQYRTTVLEFLYRKQAHPA 266 LAQD Y QYRT VLEFLY +Q+HPA Sbjct: 241 LAQDPLYSQYRTAVLEFLYHRQSHPA 266 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 225 bits (573), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 123/250 (49%), Positives = 162/250 (64%), Gaps = 8/250 (3%) Query: 9 IDIHGVEMVFHTKKGAFHALREINLTVAKGQFVTLIGHSGCGKSTLLNLIAGLLQPSEGV 68 IDI GV VF ALRE+NLT+ KG+FV LIG SGCGKSTLL ++AG S G Sbjct: 14 IDIKGVSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSSGS 73 Query: 69 LLCANREIGGPAPERAVVFQNHSLLPWLTCYENIYLGVERVFGASENRTQLRDRTRAALA 128 I GP+PER +VFQ++ L PWLT ENI G + + + +L + + Sbjct: 74 ANMYGMPIDGPSPERGMVFQDYGLFPWLTVKENIGFGQRQ---RNLPKAKLEELSAYYTD 130 Query: 129 LVGLTAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKI 188 +VGLT N P ++SGGMKQRV IAR LA + +VLLMDEPFGALDALTR LQ +LL+I Sbjct: 131 MVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDLLEI 190 Query: 189 VAKTESTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEVLEVNLARPRDRVMLAQDAQYG 248 +T+ TVV VTH V+EAV+LSDR+V+MT GP I E ++++LARPRD + ++ Sbjct: 191 WERTKVTVVFVTHAVEEAVMLSDRVVVMTAGP-GRIEEDIKLDLARPRDITAV----EFN 245 Query: 249 QYRTTVLEFL 258 + R + ++L Sbjct: 246 EIRRDITQYL 255 >gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 188 bits (477), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 103/223 (46%), Positives = 146/223 (65%), Gaps = 9/223 (4%) Query: 28 LREINLTVAKGQFVTLIGHSGCGKSTLLNLIAGLLQPSEGVLLCANREIGGPAPERAVVF 87 +++++LT+ G+FV ++G SG GKSTLL AGL+ PS G + ++ G RAVVF Sbjct: 22 IQDLSLTIEAGEFVAIVGGSGVGKSTLLRAAAGLIAPSSGDVQLKLPQLPGRR-RRAVVF 80 Query: 88 QNHSLLPWLTCYENIYLGVERVFGASENRTQLRDRTRAALALVGLTAAENKRPNEISGGM 147 Q+ LLPW T +N+ G+E G S + Q R + AL L GL + P+++SGG Sbjct: 81 QDGRLLPWRTVADNVAYGLE-TLGISADEQQ--SRIKQALQLTGLAEFGERWPHQLSGGQ 137 Query: 148 KQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTESTVVMVTHDVDEAV 207 QRVGIARALA++P +LLMDEPF A+DALTR +LQ EL++I T+S V+ VTHD+DEAV Sbjct: 138 VQRVGIARALAVQPDLLLMDEPFSAVDALTRRNLQAELIRIWQATQSAVMFVTHDIDEAV 197 Query: 208 LLSDRIVMMTNGPAATIGEVLEVNLARPRDRVMLAQDAQYGQY 250 L+DR++++ P AT+ E L ++L RPR R D + +Y Sbjct: 198 FLADRVIVLGGSP-ATVVENLRIDLPRPRVR----SDVAFAEY 235 >gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 433 Score = 170 bits (431), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 94/234 (40%), Positives = 143/234 (61%), Gaps = 8/234 (3%) Query: 8 FIDIHGVEMVFHTKKGAFHA-LREINLTVAKGQFVTLIGHSGCGKSTLLNLIAGLLQPSE 66 I++ GV+ F T G + L +++ T+ +G+ V L+G SG GKSTLL ++AGL+ Sbjct: 6 LIELKGVDKSFQTADGTPSSVLEQVDFTLTEGEIVALLGKSGSGKSTLLRIMAGLIPADS 65 Query: 67 GVLLCANREIGGPAPERAVVFQNHSLLPWLTCYENIYLGVERVFGASENRTQLRDRTRAA 126 G + + I GP A+VFQ+ +L PWLT +N+ LG+E R + R A Sbjct: 66 GSAMYRGKNIYGPVAGIAMVFQSFALFPWLTVQQNVELGLEAQGVPPAEREK---RADAM 122 Query: 127 LALVGLTAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELL 186 L L+GL P E+SGGMKQRVGIAR L P VLLMDE F ALD LT L+D++L Sbjct: 123 LDLIGLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDIL 182 Query: 187 KIVAKTE---STVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEVLEVNLARPRD 237 ++ + +++V+H+++EAV++SDRIV++++ P E+ +++L RPR+ Sbjct: 183 EMWEENRIPTKGILIVSHNIEEAVMMSDRIVVLSSSPGRIRSEI-KIDLPRPRN 235 >gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 294 Score = 166 bits (421), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 133/226 (58%), Gaps = 7/226 (3%) Query: 5 NGKFIDIHGVEMVFHTKKGAFHALREINLTVAKGQFVTLIGHSGCGKSTLLNLIAGLLQP 64 + + + V + + T++ A ++ V + L+G SGCGKSTLL +AG + P Sbjct: 36 SAPLLQVDDVSLEYRTRERVVRATHRVSFDVHQADRFVLLGPSGCGKSTLLKAVAGFILP 95 Query: 65 SEGVLLCANREIGGPAPERAVVFQNHSLL-PWLTCYENIYLGV--ERVFGASENRTQLRD 121 EG + + + P P+R VVFQ L PW T +N+ + R G R + + Sbjct: 96 VEGEIRLDGKAVTAPGPDRIVVFQEFDQLSPWKTVKQNVIFPLLASRTLG----RKEAEE 151 Query: 122 RTRAALALVGLTAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHL 181 R LA VGL+ + P+++SGGMKQRV IARALAM+P+VLLMDEPF ALDALTR + Sbjct: 152 RALHYLAKVGLSKFSDVHPHQLSGGMKQRVAIARALAMQPRVLLMDEPFAALDALTRRKM 211 Query: 182 QDELLKIVAKTESTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEV 227 Q+ELL++ + T++ VTH ++EA+++ +RI +++ P E+ Sbjct: 212 QEELLQLWDEVHFTLLFVTHSIEEALVVGNRIALLSPHPGRMRAEI 257 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 596,483 Number of extensions: 23404 Number of successful extensions: 269 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 187 Number of HSP's successfully gapped: 63 Length of query: 270 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 188 Effective length of database: 917,867 Effective search space: 172558996 Effective search space used: 172558996 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)