BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1009.p (318 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport syst... 397 e-112 gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bica... 114 9e-27 gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bica... 85 6e-18 gi|152981719|ref|YP_001355226.1| ABC-type nitrate/sulfonate/bica... 74 8e-15 gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport sys... 65 7e-12 >gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport system, permease component [Janthinobacterium sp. Marseille] Length = 309 Score = 397 bits (1020), Expect = e-112, Method: Compositional matrix adjust. Identities = 214/306 (69%), Positives = 253/306 (82%), Gaps = 3/306 (0%) Query: 14 KPAGNSHAGVTAASE-PLRAAAANEAQVVPAASAAGSVKPRSLRKKIIAGGLFMRVVPPL 72 +PA N+ T +E +R+ A A A A +V P+ ++ K + + V+PP+ Sbjct: 6 RPAENAPICATTETEVSMRSEVAGPADAA-VAKATPAVAPK-VKAKWSSRPFLLAVLPPI 63 Query: 73 LGVALLVLVWQIIALKTASFPTPWVTLKEAGVMFSDPFYRNSPNDQGIGWNVLASLQRVG 132 G+ L+LVW+II+ K++ P+P VT + A +F+DPFY N PNDQGIGWN+LASL+RVG Sbjct: 64 FGMVFLILVWEIISAKSSGIPSPLVTFQSAQALFADPFYSNGPNDQGIGWNILASLKRVG 123 Query: 133 LGFGLAALVGIPLGFAIGRVEFLARMFGPIISLLRPVSPLAWLPIGLLVFKSANPAAIWS 192 +GFG+AALVGIPLGF IGR +FL+ MF PIISLL+PVSPLAWLPIGLLVFK+A+PAAIWS Sbjct: 124 MGFGMAALVGIPLGFMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLLVFKAADPAAIWS 183 Query: 193 IFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLTGVRLSIG 252 IFICSIWPMIINTAVGVQRVPQDYMNVA+VL LSEWK++TKILFPSVLPYMLTGVRL+IG Sbjct: 184 IFICSIWPMIINTAVGVQRVPQDYMNVAKVLKLSEWKIVTKILFPSVLPYMLTGVRLAIG 243 Query: 253 TAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLILEQLLVALAKAFT 312 TAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLILEQ+LV +A+AFT Sbjct: 244 TAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLILEQILVGIARAFT 303 Query: 313 YEQVNH 318 YE V Sbjct: 304 YEDVKS 309 >gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 276 Score = 114 bits (284), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 117/211 (55%), Gaps = 3/211 (1%) Query: 100 KEAGVMFSDPFYRNSPND---QGIGWNVLASLQRVGLGFGLAALVGIPLGFAIGRVEFLA 156 K+ G+M D + +D + + ++ S+ RV GF AALVGIPLG IGR++ + Sbjct: 53 KDVGLMLYDFAFGGIYDDAFSETLPLHLWKSVTRVYGGFFAAALVGIPLGLLIGRIKVIR 112 Query: 157 RMFGPIISLLRPVSPLAWLPIGLLVFKSANPAAIWSIFICSIWPMIINTAVGVQRVPQDY 216 + P + LLRPV AWLP+ ++ F AAI+ +F+ + +P++ NT GV+ V Sbjct: 113 DLLDPTLQLLRPVPVTAWLPLSMIFFGIGPNAAIFLVFLGAFYPIVFNTTFGVKAVDNRL 172 Query: 217 MNVARVLNLSEWKVLTKILFPSVLPYMLTGVRLSIGTAWLVIVAAEMLTGGVGIGFWVWD 276 A +L + + +++ P+ +P +L G+RL G AW++IV EM G+G + D Sbjct: 173 FEAALMLGCNGSSLFRQVVLPAAMPSILNGLRLGHGFAWILIVVGEMTGVPEGLGAVIMD 232 Query: 277 EWNNLNVPHIIIAIVVIGVVGLILEQLLVAL 307 +I +VVIG+VG +++LVA+ Sbjct: 233 GRMLSRTDLVIAGMVVIGIVGYSTDRILVAI 263 >gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 296 Score = 84.7 bits (208), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 97/188 (51%) Query: 117 DQGIGWNVLASLQRVGLGFGLAALVGIPLGFAIGRVEFLARMFGPIISLLRPVSPLAWLP 176 +QG+ ++ AS+ RV G+ + A++ I G +G + F P LR + LAW+P Sbjct: 90 EQGLLVHISASVARVFSGYAIGAVLAILFGLFVGLSKHAEAFFEPTFQALRAIPSLAWVP 149 Query: 177 IGLLVFKSANPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILF 236 + LL F I I I + +P+ + G++ V + + + + LS + +I+ Sbjct: 150 LLLLWFGIDETPKITLIAIGAFFPIYLGLVSGIRNVDRKLIELGEIYGLSAPALARRIVL 209 Query: 237 PSVLPYMLTGVRLSIGTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVV 296 P+ LP + TG+R + AW+ +VAAE++ GIG+ + D ++ AI ++ ++ Sbjct: 210 PAALPSLFTGLRNGLSLAWMFLVAAELIAATKGIGYLLTDGRETSRPDVVLAAIFLLAIL 269 Query: 297 GLILEQLL 304 G + + LL Sbjct: 270 GKLTDGLL 277 >gi|152981719|ref|YP_001355226.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 255 Score = 74.3 bits (181), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 93/208 (44%), Gaps = 20/208 (9%) Query: 65 FMRVVPPLLGVALLVLVWQIIALKTASFPTPWVTLKEAGVMFSDPFYRNSPNDQGIGWN- 123 F RV + GV L VL+W+ AS WV G + DPF P+ W Sbjct: 9 FTRVAYGVTGVVLFVLLWK------ASGFFAWV---NPGTL-PDPF--KLPHAFMQEWTA 56 Query: 124 ------VLASLQRVGLGFGLAALVGIPLGFAIGRVEFLARMFGPIISLLRPVSPLAWLPI 177 + +SL G GL L GI G A + + +I +LRP+ PLAW+ Sbjct: 57 GRLLPAIGSSLVHYFWGLGLGTLFGIAFGLAAATIRPFELLQAYLIRILRPIPPLAWVVF 116 Query: 178 GLLVFKSANPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNL-SEWKVLTKILF 236 + FK ++ A + I I W TA V+ + + +AR S W+ I Sbjct: 117 AIAWFKVSHAGAAFVISIGVFWINYYATASAVRNIDPRFYELARSFGQGSYWRRAVSITL 176 Query: 237 PSVLPYMLTGVRLSIGTAWLVIVAAEML 264 P++ P L G+R IG AW+ ++AAE+L Sbjct: 177 PAIAPGTLAGIRTGIGQAWMTLIAAELL 204 >gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport system permease protein [Janthinobacterium sp. Marseille] Length = 276 Score = 64.7 bits (156), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 75/140 (53%) Query: 158 MFGPIISLLRPVSPLAWLPIGLLVFKSANPAAIWSIFICSIWPMIINTAVGVQRVPQDYM 217 + + ++R + LA +P+ +L F + I+ + + +P+ +NT G++ V + + Sbjct: 114 LLDTTLQMIRNIPALALIPLVILWFGIEETSKIFLVAVGVFFPVYLNTFHGIRSVDKGLI 173 Query: 218 NVARVLNLSEWKVLTKILFPSVLPYMLTGVRLSIGTAWLVIVAAEMLTGGVGIGFWVWDE 277 +A+ LS W + ++ P LP +L GVR S+G W++++ AE ++ GIG+ + Sbjct: 174 EMAKSYGLSGWSLYRDVILPGALPSILVGVRFSLGLVWVLLIVAETISAQSGIGYMTMNA 233 Query: 278 WNNLNVPHIIIAIVVIGVVG 297 L +++ I++ ++G Sbjct: 234 REFLQTDVVLVGILLYALLG 253 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 622,754 Number of extensions: 21605 Number of successful extensions: 118 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 7 Length of query: 318 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 235 Effective length of database: 914,170 Effective search space: 214829950 Effective search space used: 214829950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)