BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1008.p
         (433 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979787|ref|YP_001352170.1| nitrate transport system substr...   689   0.0  

>gi|152979787|ref|YP_001352170.1| nitrate transport system
           substrate-binding protein [Janthinobacterium sp.
           Marseille]
          Length = 407

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/404 (80%), Positives = 356/404 (88%)

Query: 29  RRQLLQGAALATGAGMMGLATGGAWAAGSDKPEKEEVKIGFIPLTDCASVVMASVLGFDK 88
           RR +L+  A  T     GLAT G WAAGSDKPEKEEVKIGFIPLTDCASVVMASV+GFDK
Sbjct: 3   RRTILKAGATITATAFSGLATQGVWAAGSDKPEKEEVKIGFIPLTDCASVVMASVMGFDK 62

Query: 89  KYGIKIVPSKEASWAGVRDKLTNGELDAAHVLYGLIYGVQLGIGGQKKDMAVLMGLNHNG 148
           KYGIKIVP+KEASWAGVRDKL NGELDAAHVLYGL+YGV  GIGG KKDMAVLMGLN+NG
Sbjct: 63  KYGIKIVPTKEASWAGVRDKLVNGELDAAHVLYGLVYGVHEGIGGAKKDMAVLMGLNNNG 122

Query: 149 QAITLSKKLADKGAVDGASLYKLMQSDKREYTFAQTFPTGTHAMWLYYWLAANGIHPMKD 208
           QAITLSKKLA+ GA+DG  L KLMQ +KREYTFAQTFPTGTHAMWLYYWLA  GI+PMKD
Sbjct: 123 QAITLSKKLAEGGAIDGPGLAKLMQMEKREYTFAQTFPTGTHAMWLYYWLATYGINPMKD 182

Query: 209 AKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITAITTQDIWKDHPEKVLGTS 268
           AKVITVPPPQMVANMRVGNMDG+CVGEPW HRAIVDG+GITA TTQDIWKDHPEKVLGT+
Sbjct: 183 AKVITVPPPQMVANMRVGNMDGYCVGEPWNHRAIVDGIGITAATTQDIWKDHPEKVLGTT 242

Query: 269 REFVQKYPNTCRAMMAAILDASKWIDASLVNKNKMAEVIADKSYVNTSKDVIDQRILGRY 328
            ++V K PNT RA+ AA+L+A +WID+SL NKNKMAEVIA KSYVNTS DVI+QRILGRY
Sbjct: 243 SDWVAKNPNTARALTAAVLEAGRWIDSSLSNKNKMAEVIAAKSYVNTSVDVINQRILGRY 302

Query: 329 QNGLGKTWDDPNYMKFYEEGQVNFPFLSDGMWFMTQHRRWGLLKSDPDYLAVAKSVNQID 388
           QNGLGKTWDDPNYMKFY +GQ NFP+LSDGMWFMTQH+RWGL K +PDYL  AKSVN+ID
Sbjct: 303 QNGLGKTWDDPNYMKFYNDGQANFPYLSDGMWFMTQHKRWGLAKGEPDYLGTAKSVNRID 362

Query: 389 LYKDAAAMTKTPLPKDVMRSSKLMDGTVWDGKNPAAYAQSFKIK 432
           LYK+AA +   P+PK  MRSSKL+DG VWDGKNP AYA+SFKIK
Sbjct: 363 LYKEAATLANVPVPKSPMRSSKLIDGVVWDGKNPKAYAESFKIK 406


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,011,409
Number of extensions: 40946
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 347
Effective length of database: 903,079
Effective search space: 313368413
Effective search space used: 313368413
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)