BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1002.p (691 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982038|ref|YP_001354301.1| signal transduction histidine k... 446 e-126 gi|152981531|ref|YP_001354607.1| Signal transduction histidine k... 182 7e-47 gi|152983036|ref|YP_001352598.1| sensory box histidine kinase [J... 149 4e-37 gi|152982585|ref|YP_001353143.1| two-component sensor histidine ... 145 9e-36 >gi|152982038|ref|YP_001354301.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 678 Score = 446 bits (1148), Expect = e-126, Method: Compositional matrix adjust. Identities = 251/601 (41%), Positives = 370/601 (61%), Gaps = 11/601 (1%) Query: 76 SAAGFILGALALYLSCMH--SPTRPPALRRVRLGLALLLLLLGLGSLVHALMYALG---- 129 +A F+L LAL L +P + ++L + LLGL +L+ M+ + Sbjct: 56 TALAFVLAGLALALRSFKVSTPRAQTVFAVTAVIVSLCVALLGLSTLLQ-FMFGVNVGIE 114 Query: 130 -WLPLDSTHPISPL--AISPLLSLGFVLMAGSLLLHDWRLLGGYYPAEYLAFTLMALSAI 186 +P +T+ ++PL +LGF L SLLL D+R +YP+EY AF L + I Sbjct: 115 RLIPALATNEYKAYLERMAPLPALGFTLAGLSLLLLDYRTARDHYPSEYGAFVLAGVMGI 174 Query: 187 PLVGYLYDVSQFIYLQFPLPVSLLSSLVLALLGAALLMARPGHPLMAVILRIAPGGQMLR 246 PL+G+LY+V L V+ S++ +L +L ARP H LM++ +PGG +LR Sbjct: 175 PLIGHLYNVMSVDELNAAHTVTPFISIIFFILALGILSARPEHRLMSLWNSTSPGGPLLR 234 Query: 247 HLLPQTLFLLLAFSLLLNWGMSHGWILPELVLPTLTLINGVIVLFIFWGSASRLDSEYGE 306 LLP +L LL+ + WG+ + + + P L L++ ++ +F +A+ L+ EY Sbjct: 235 RLLPNSLILLVILDFAIKWGVQNRFYDADKASPLLILLSSSLLFIMFCRTAALLNREYEG 294 Query: 307 RTRNAQKLAETSALLNAVSESTSDPIFVKNRQGLMIFANPATLHKLGKTWEETMYRSSRE 366 R + LAE++ALL AVS++T D IFVK+ G M+FANPA L LGK EE + S + Sbjct: 295 RQQGEAALAESNALLRAVSDNTPDAIFVKDNTGRMVFANPAKLRLLGKQREEVIGFRSID 354 Query: 367 LFLLPEEAEAVDRDDRRVMASGKPEKLEQTLHLPEGVVTFQTAKVPWFGKDGSVQGVIGI 426 L+ L E+AE V +D+ V+ G P+ E T+ GV T + K PW +G + G++GI Sbjct: 355 LYPLKEDAEKVKLEDQSVLDGGVPKVFETTIRFASGVHTMHSTKAPWLNANGQIMGLVGI 414 Query: 427 STDITERKQAEDELRQRESQLEKTVVQRTALLRELTNHLETVREEEKRAIARELHDNMGA 486 STDITERK+ ED L+ E+QLE V RT + EL HLET REEEKR+IARELHD++G+ Sbjct: 415 STDITERKRMEDSLKAHETQLEALVAARTFEVSELIGHLETTREEEKRSIARELHDDLGS 474 Query: 487 SLTALSMHLEGVYQILPADDKWADRKTRMQGLMKSLVATTRRIQTELRPNTLDLFGLKAA 546 +LTAL+MHL ++Q +P + K+ +R +++ L+ S+ TRRIQ LRP+ LD+FG+K A Sbjct: 475 ALTALNMHLSLLFQQMPPEPKFTERSLKIKALLSSITDATRRIQNGLRPDKLDVFGVKVA 534 Query: 547 ISEQLDELHERTGIICRASLPDEDVEVGHEMEIAIYRMLQEMLNNVTKHAKASKVDVILD 606 I+EQ E + TG+ C ASLPD+ + ++IA++RM+QE LNN+ KHA+A+ VDV+LD Sbjct: 535 IAEQAAEFEKYTGVTCNASLPDDRLIYAPRVDIALFRMVQESLNNIAKHAQATHVDVVLD 594 Query: 607 VDEDHVALTVRDDGVGIPEERRDNHKTYGLRGLRERATFFGGEVDIRSTPGKGALISISL 666 ED + LT+RD+GVG+P + T+GLRG+RERA + GG V + S G+G I+IS+ Sbjct: 595 DTEDEILLTIRDNGVGMPTA-QSGVMTHGLRGMRERAGYLGGSVQVTSVVGRGTTIAISI 653 Query: 667 P 667 P Sbjct: 654 P 654 >gi|152981531|ref|YP_001354607.1| Signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 354 Score = 182 bits (461), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 125/368 (33%), Positives = 193/368 (52%), Gaps = 17/368 (4%) Query: 314 LAETSALLNAVSESTSDPIFVKNRQGLMIFANPATLHKLGKTWEETMYRSSRELFLLPEE 373 +++ L A+ + D ++K++ I N A + E ++++ E++ PEE Sbjct: 1 MSKDDELQKAILNNIPDQAWLKDKDSRYILVNEAFIAACRLPESEILHKTPAEVW--PEE 58 Query: 374 AEAVDRD-DRRVMASGKPEKLEQTLHLPEGVVT-FQTAKVPWFGKDGSVQGVIGISTDIT 431 V D D+RVM G+ + E+ H +G + + T K P + G V G GIS DIT Sbjct: 59 WGNVYIDTDKRVMEQGERLRYEEWRHTEDGTLRWYDTIKTPIRNEQGEVIGTTGISRDIT 118 Query: 432 ERKQAEDELRQRESQLEKTVVQRTALLRELTNHLETVREEEKRAIARELHDNMGASLTAL 491 +RK AE EL +QL REL+ +L+ VREEE+ I+RELHD +G SLTA+ Sbjct: 119 DRKMAEQELLASRTQL-----------RELSAYLQVVREEERTRISRELHDELGQSLTAI 167 Query: 492 SMHLEGV-YQILPADDKWADRKTRMQGLMKSLVATTRRIQTELRPNTLDLFGLKAAISEQ 550 + L + Q DD+W + ++ + S V + +RI +LRP LD GL A+ Sbjct: 168 RIGLSVIETQHEMHDDEWLKSVSGLKKIADSTVESVQRIAADLRPLILDELGLLPAMDWL 227 Query: 551 LDELHERTGIICRASLPDEDVEVGHEMEIAIYRMLQEMLNNVTKHAKASKVDVILDVDED 610 L+ ER+ I SLP + E AI+R+LQE L NV++H++A+ V V L +D Sbjct: 228 LESFSERSAIAYELSLPSTPLAFSREASTAIFRILQESLTNVSRHSQATLVGVALKETKD 287 Query: 611 HVALTVRDDGVGIPEERRDNHKTYGLRGLRERATFFGGEVDIRSTPGKGALISISLPLNG 670 + L + D+G GI + H + GL G+RERA GG++ I+S G G I + +P Sbjct: 288 FITLKITDNGKGI-DSSVSRHDSLGLLGMRERAFMLGGKLKIQSRAGSGTSIEVRIPKTN 346 Query: 671 QDHSAGRR 678 H+ R+ Sbjct: 347 AAHAGERK 354 >gi|152983036|ref|YP_001352598.1| sensory box histidine kinase [Janthinobacterium sp. Marseille] Length = 626 Score = 149 bits (377), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 106/367 (28%), Positives = 183/367 (49%), Gaps = 26/367 (7%) Query: 311 AQKLAETS-----ALLNAVSESTSDPIFVKNRQGLMIFANPATLHKLGKTWEETMYRSSR 365 AQ+ AE S ++E++ D + +R I+ NPA L +G +++ + + Sbjct: 273 AQRQAEDSLRKSEQEFRTLAENSPDGVIRYDRDCKRIYVNPAHLRNMGVEYDDAVNVTLD 332 Query: 366 ELF---LLPEEAEAVDRDDRRVMASGKPEKLEQTLHLPEG-VVTFQTAKVPWFGKDGSVQ 421 + + +E A+ R VM +G+P ++ P+G +V F V F G + Sbjct: 333 SYWGADMTVDEYRAILRS---VMTTGQPAEVSGRWTRPDGGIVFFAVHAVAEFDSKGEAE 389 Query: 422 GVIGISTDITERKQAEDELRQRESQLEKTVVQRTALLRELTNHLETVREEEKRAIARELH 481 V+ IS +IT +AE++LRQ + LLR+L + ET E+E++ IARELH Sbjct: 390 SVLAISRNITSIIEAENQLRQSQK-----------LLRQLADRSETSIEDERKHIARELH 438 Query: 482 DNMGASLTALSMHLEGVY-QILPADDKWADRKTRMQGLMKSLVATTRRIQTELRPNTLDL 540 D++ L+AL M++ + + ++ + M + + + R + T LRP LD+ Sbjct: 439 DDLAQHLSALRMNVSVMKLEFGHLSSAFSGQAETMIERLDATIKIARNVITALRPTALDM 498 Query: 541 FGLKAAISEQLDELHERTGIICRASLPDEDVEVGHEMEIAIYRMLQEMLNNVTKHAKASK 600 G+ A+ + + I CR + DE++ + AI+R+ QE L N+++HA+A Sbjct: 499 -GIVQALEWLVKDFSTHKEISCRLHIHDENLILSDRSATAIFRIAQESLRNISRHAEACN 557 Query: 601 VDVILDVDEDHVALTVRDDGVGIPEERRDNHKTYGLRGLRERATFFGGEVDIRSTPGKGA 660 VDV L + L +RDDG G ++GL G++ER GG+V+I S G+G Sbjct: 558 VDVNLSHKDGMCLLAIRDDGRGFNTTNVP-FNSFGLMGIKERVLILGGKVEIESEEGQGT 616 Query: 661 LISISLP 667 I +++P Sbjct: 617 TIRVNIP 623 >gi|152982585|ref|YP_001353143.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 490 Score = 145 bits (366), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 90/254 (35%), Positives = 144/254 (56%), Gaps = 14/254 (5%) Query: 416 KDGSVQGVIGISTDITERKQAEDELRQRESQLEKTVVQRTALLRELTNHLETVREEEKRA 475 +DGSVQ GI T+IT K ++E +++ A L EL+ H+ TV+E+E+ Sbjct: 234 EDGSVQWE-GIMTNITASKLEQEE-----------IIRSRAQLAELSEHVNTVKEKERTR 281 Query: 476 IARELHDNMGASLTALSMHLEGVYQILPA-DDKWADRKTRMQGLMKSLVATTRRIQTELR 534 IARE+HD++G +LTA+ M L + + LP + ++ ++ L+ + T RI +LR Sbjct: 282 IAREIHDDLGGNLTAIKMALALLTRRLPGKSSELLEKAAYVESLVDRTIETVHRIAGDLR 341 Query: 535 PNTLDLFGLKAAISEQLDELHERTGIICRASLPDEDVEVGHEMEIAIYRMLQEMLNNVTK 594 P LD FGL AAI Q E ++ GI C ++++ + A++R+ QE L N+ K Sbjct: 342 PGILD-FGLVAAIDWQSKEFEKQLGIPCEFVSNQAEIDLDLDQATALFRIFQEALTNIAK 400 Query: 595 HAKASKVDVILDVDEDHVALTVRDDGVGIPEERRDNHKTYGLRGLRERATFFGGEVDIRS 654 HA+AS V V L +V L + D+G GI R K++G+RG+ ER+ GG + + + Sbjct: 401 HAQASLVSVQLMHTPQYVRLEIIDNGRGIELADRAKPKSFGIRGMVERSVAMGGSLSVST 460 Query: 655 TPGKGALISISLPL 668 P G +++I+LPL Sbjct: 461 APKGGTVVAINLPL 474 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,327,106 Number of extensions: 48837 Number of successful extensions: 214 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 5 Length of query: 691 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 601 Effective length of database: 888,291 Effective search space: 533862891 Effective search space used: 533862891 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)