BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1001.p
         (169 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982827|ref|YP_001354300.1| CheY-like domain-containing pro...   124   2e-30

>gi|152982827|ref|YP_001354300.1| CheY-like domain-containing
           protein [Janthinobacterium sp. Marseille]
          Length = 144

 Score =  124 bits (312), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 94/131 (71%), Gaps = 1/131 (0%)

Query: 22  PLQIFLVEDSEDVRDLIVESLAEIAGVHLVGHAESEREALRHLQLHSYDVLILDIQLKQG 81
           PL+IFLVEDS DVR+L++E+LA I GV + G +ESE +AL  L     DVLI+DIQLK+G
Sbjct: 14  PLRIFLVEDSLDVRELMIENLAMIPGVVVAGVSESEGDALNQLNALPCDVLIVDIQLKKG 73

Query: 82  NGMSLLQSLARSNTRRQSEVKVVFSNHVSATYRRVGVQCGVQHFFDKSSELPLLCDLLEE 141
           NG++LL+ ++   T+  + +K++ SN+ +  +RRVG Q GV HFFDK+SE P L +L++ 
Sbjct: 74  NGINLLRQISEK-TKISNTLKIICSNNATEVFRRVGRQYGVNHFFDKTSEFPQLFELVKN 132

Query: 142 LAGQKAGKSGR 152
           L+  +   +GR
Sbjct: 133 LSCARLEYNGR 143


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 341,603
Number of extensions: 11163
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 92
Effective length of database: 936,352
Effective search space: 86144384
Effective search space used: 86144384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)