BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1000.p (209 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding respons... 362 e-101 gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding respons... 220 4e-59 gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding respons... 182 1e-47 gi|152983037|ref|YP_001352599.1| two-component response regulato... 174 3e-45 gi|152981504|ref|YP_001353304.1| LuxR family DNA-binding respons... 95 2e-21 >gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 210 Score = 362 bits (928), Expect = e-101, Method: Compositional matrix adjust. Identities = 177/210 (84%), Positives = 193/210 (91%), Gaps = 1/210 (0%) Query: 1 MTKILVVDDHAVVRAGVQHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDK 60 M KILVVDDHAVVRAGVQ+FI+++P M+I GEA+TA+EAIRLVR QDWDIVLLDI MPDK Sbjct: 1 MIKILVVDDHAVVRAGVQYFIAQVPDMKIEGEAATAQEAIRLVRAQDWDIVLLDINMPDK 60 Query: 61 SGVEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILR 120 SGVEVLKQIKREKPELPVL+LSMHPESRYAVQ+LRSGASGYVQKEALA ELVNAI TILR Sbjct: 61 SGVEVLKQIKREKPELPVLILSMHPESRYAVQILRSGASGYVQKEALAEELVNAIQTILR 120 Query: 121 GHKYISYGVAELLTSE-PVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTV 179 GHKYIS+ VAELLT+E +EKPLHETLS+REYEIFYKL QG GVT+IADELCLSVKTV Sbjct: 121 GHKYISHTVAELLTTELDTSTEKPLHETLSKREYEIFYKLCQGHGVTKIADELCLSVKTV 180 Query: 180 STYRSRVLQKMSMTNNADIIYYAIKNNLID 209 STYR+RVLQKM+M NNA IIYYAIK NLID Sbjct: 181 STYRARVLQKMNMENNAGIIYYAIKQNLID 210 >gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 215 Score = 220 bits (561), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 104/208 (50%), Positives = 151/208 (72%), Gaps = 1/208 (0%) Query: 3 KILVVDDHAVVRAGVQHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSG 62 K+L+ DDHA+VR G++ +++ + + G A EAI+L R ++LLDI+MPD+SG Sbjct: 8 KVLIADDHAIVREGLKQILADTKDIVVAGHAENGIEAIKLSREGACQVLLLDISMPDRSG 67 Query: 63 VEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGH 122 +EVLKQ+K+E P++ VLMLSMH E +YA++ L++GASGY+ K++ ELVNAI + G Sbjct: 68 IEVLKQVKKESPKIAVLMLSMHREDQYAIRSLKAGASGYLNKQSAPAELVNAIRQVAAGR 127 Query: 123 KYISYGVAELLTSE-PVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVST 181 KYIS +A+ L ++ D E PLHETLS REY+ + G+ V+ IA+EL LSVKT+S Sbjct: 128 KYISAALAQELANQISDDHETPLHETLSDREYQTLTMIASGKTVSDIANELVLSVKTISM 187 Query: 182 YRSRVLQKMSMTNNADIIYYAIKNNLID 209 YRSR+LQKM + +NA++ +YAIKN+L+D Sbjct: 188 YRSRLLQKMKLRHNAELTHYAIKNHLVD 215 >gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 214 Score = 182 bits (463), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 87/210 (41%), Positives = 141/210 (67%), Gaps = 1/210 (0%) Query: 1 MTKILVVDDHAVVRAGVQHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDK 60 M +IL+ DDHA++R G++ IS + +M + GEAS EE ++ +R+ D+++LD++MP + Sbjct: 1 MIQILIADDHAIIRDGLKQIISFVSNMAVAGEASNGEEVLQKLRSLQVDVLVLDMSMPGR 60 Query: 61 SGVEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILR 120 SG+ +++QI KP+LP+L+LSMH ES+YAVQ +R+GASGY+ K +++L+ I + Sbjct: 61 SGIALIQQINAIKPDLPILVLSMHQESQYAVQAMRAGASGYITKNTASSQLIEGIRKVAE 120 Query: 121 GHKYISYGVAELLTSEPVDSEKPL-HETLSQREYEIFYKLGQGQGVTQIADELCLSVKTV 179 G ++S ++ L + E L H L+ RE++IF L +G V IA L LS KT+ Sbjct: 121 GGTFVSPEISAKLIKQLHKPETDLPHTKLTAREFQIFSMLVEGHSVNDIAKILSLSNKTI 180 Query: 180 STYRSRVLQKMSMTNNADIIYYAIKNNLID 209 ST+++ VLQKM + A ++YYA+K+ LI+ Sbjct: 181 STHKAAVLQKMEASTTASLVYYALKHGLIN 210 >gi|152983037|ref|YP_001352599.1| two-component response regulator [Janthinobacterium sp. Marseille] Length = 209 Score = 174 bits (441), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 85/209 (40%), Positives = 137/209 (65%) Query: 1 MTKILVVDDHAVVRAGVQHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDK 60 M +IL+ DDHA++R G++H S + +++ EAST + L+R D D++LLD+ MP Sbjct: 1 MLRILMADDHALMREGLKHLFSVVGGIDVVAEASTGPQVFELLRRTDVDLILLDMTMPGI 60 Query: 61 SGVEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILR 120 SG ++ I+ +K +L+LSMH E ++A + L +GASGY+ K+ L++AI+ + Sbjct: 61 SGATLIHHIRSQKTAPNILVLSMHDEVQFARRALDAGASGYITKDTDPQTLIDAIHRVAE 120 Query: 121 GHKYISYGVAELLTSEPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVS 180 G ++IS G+AE + + +P HE LS REYEIF L G+GV +IADEL +S KTVS Sbjct: 121 GGRFISRGLAEEMLFDHGTRARPSHELLSTREYEIFQLLVHGRGVNEIADELSISNKTVS 180 Query: 181 TYRSRVLQKMSMTNNADIIYYAIKNNLID 209 T+++R+++KM N + +I YAI + +++ Sbjct: 181 THKTRLMEKMKCENVSQLIRYAIAHGMLE 209 >gi|152981504|ref|YP_001353304.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 231 Score = 95.1 bits (235), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 113/215 (52%), Gaps = 10/215 (4%) Query: 4 ILVVDDHAVVRAGVQHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGV 63 +++V+D RA + + + P M + G A T E + L++ D++L+D+ +PD SG+ Sbjct: 15 VVIVEDDPGFRAALSKVVQDAPDMHLSGSAGTRAEGLALLQGAPADVLLVDLGLPDGSGI 74 Query: 64 EVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHK 123 +V+K P +++ + + + ++ + SGA+GY+ K++ T +++ I +I G Sbjct: 75 DVIKAAVLLWPSCSIMVSTNFGDETHVMRSIESGAAGYLLKDSSPTRMIDEIRSIASGGS 134 Query: 124 YISYGV-----AELLTSEPVDSEK--PLHET---LSQREYEIFYKLGQGQGVTQIADELC 173 IS + A TS PV +E+ P + LS RE E+ + +G +IA + Sbjct: 135 PISPIIARQILARFRTSAPVTTEEQAPAEDNSALLSTREREVLDFISKGFTTQEIAKLMQ 194 Query: 174 LSVKTVSTYRSRVLQKMSMTNNADIIYYAIKNNLI 208 LS TV T+ R+ K+ +T+ A+ +Y A L+ Sbjct: 195 LSHFTVRTFVRRIYSKLKVTSKAEALYEARTQGLL 229 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.132 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 432,383 Number of extensions: 15751 Number of successful extensions: 123 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 122 Number of HSP's successfully gapped: 19 Length of query: 209 Length of database: 1,221,021 Length adjustment: 79 Effective length of query: 130 Effective length of database: 928,958 Effective search space: 120764540 Effective search space used: 120764540 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)