BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0998.p
         (127 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982423|ref|YP_001354302.1| hypothetical protein mma_2612 [...    88   1e-19

>gi|152982423|ref|YP_001354302.1| hypothetical protein mma_2612
           [Janthinobacterium sp. Marseille]
          Length = 180

 Score = 88.2 bits (217), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/94 (57%), Positives = 67/94 (71%), Gaps = 1/94 (1%)

Query: 26  PAATQYKADKSKADADYKAAKKKCSPMKGNDKDVCEKQAKADHESAIADAKAKRKGVEAD 85
           PAA + KA    ADA+YK AK+KC    GN KDVC K+AKA H SAIADAKA ++  +A 
Sbjct: 84  PAAHK-KARTDIADANYKVAKEKCDDFNGNQKDVCVKEAKAAHTSAIADAKASKEVTDAR 142

Query: 86  KDAQKDKNDANYDVAKEKCDAMSGEAKDKCVANA 119
           KDA+ +K DAN  V KEKCDA++GE K +C+A A
Sbjct: 143 KDARDEKVDANVAVKKEKCDALAGEEKSRCIAAA 176



 Score = 84.0 bits (206), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 2/125 (1%)

Query: 1   MKKIIATMIFGAAAIGMQGAALAA-DPAATQYKADKSKADADYKAAKKKCSPMKGNDKDV 59
           MKK ++ ++  AA+ G   A+ AA + A   Y A K++A+ADYK A+  C  +KGN KDV
Sbjct: 1   MKKSLSMIVMAAASFGFMSASSAAPNEAKANYDAAKTRAEADYKVARAHCDSLKGNAKDV 60

Query: 60  CEKQAKADHESAIADAKAKRKGVE-ADKDAQKDKNDANYDVAKEKCDAMSGEAKDKCVAN 118
           C+++AKA    A A+A+A  KG   A K A+ D  DANY VAKEKCD  +G  KD CV  
Sbjct: 61  CQEEAKAGEVKAKAEAEAAYKGTPAAHKKARTDIADANYKVAKEKCDDFNGNQKDVCVKE 120

Query: 119 AKSKY 123
           AK+ +
Sbjct: 121 AKAAH 125


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.312    0.124    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 130,310
Number of extensions: 2184
Number of successful extensions: 19
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 2
Length of query: 127
Length of database: 1,221,021
Length adjustment: 73
Effective length of query: 54
Effective length of database: 951,140
Effective search space: 51361560
Effective search space used: 51361560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 124 (52.4 bits)