BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0995.p
         (104 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981952|ref|YP_001355264.1| hypothetical protein mma_3574 [...   106   3e-25
gi|152980872|ref|YP_001353832.1| hypothetical protein mma_2142 [...    65   1e-12

>gi|152981952|ref|YP_001355264.1| hypothetical protein mma_3574
          [Janthinobacterium sp. Marseille]
          Length = 100

 Score =  106 bits (265), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 68/99 (68%)

Query: 1  MQTTKFKTVRSDVQSLLQQAQDMFAEAATATGAKADELRAGAQALLEQALNTAQDAQAAV 60
          M+ +  KT RSD+++L++ AQ++F EA +ATG +ADELR     LL+ AL  A + Q A 
Sbjct: 1  MKASTLKTTRSDMKTLVKDAQELFREATSATGERADELRNRGLQLLDNALVKAHEVQTAA 60

Query: 61 VDTSRQIVTSTDDYVHSNPWRAVVIGTGIGLLVGLAVGR 99
          ++T +++    DDYVH NPWRAV I  G+G+LVGL + R
Sbjct: 61 IETGKEVAEKADDYVHENPWRAVAISAGVGVLVGLLISR 99


>gi|152980872|ref|YP_001353832.1| hypothetical protein mma_2142
          [Janthinobacterium sp. Marseille]
          Length = 99

 Score = 64.7 bits (156), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%)

Query: 4  TKFKTVRSDVQSLLQQAQDMFAEAATATGAKADELRAGAQALLEQALNTAQDAQAAVVDT 63
          +K   +  D+++L +  +D+  EA +    K  EL       L+ A+  A++     V  
Sbjct: 3  SKVDDISKDLKALSRDTKDLAREAKSQAIEKTGELSKKYVEFLDSAIAAAKEIPTVAVKK 62

Query: 64 SRQIVTSTDDYVHSNPWRAVVIGTGIGLLVGLAVGR 99
          ++++ T+TDDYV  NPWRAV I  G+GL++G    R
Sbjct: 63 TKEVATTTDDYVTHNPWRAVTISAGLGLVLGFLFSR 98


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.125    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 121,783
Number of extensions: 2701
Number of successful extensions: 25
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 2
Length of query: 104
Length of database: 1,221,021
Length adjustment: 70
Effective length of query: 34
Effective length of database: 962,231
Effective search space: 32715854
Effective search space used: 32715854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 122 (51.6 bits)