BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0990.p (255 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 437 e-124 gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 217 5e-58 gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino a... 176 2e-45 gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 170 1e-43 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 138 4e-34 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 437 bits (1124), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/253 (84%), Positives = 231/253 (91%) Query: 3 QTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGSF 62 Q +L I VSKRFGGLQAL+ V I I +GQIYGLIGPNGAGKTTFFNVITGLYQ DTGSF Sbjct: 4 QIILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSF 63 Query: 63 ELAGQPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKA 122 ELAG+PYSPSAPH+VAKAGIARTFQNIRLFGEMT LENVM+G HVRT Q +FGAVF HKA Sbjct: 64 ELAGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKA 123 Query: 123 ARDEEAAIRAKSQQLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATEPQLLALDEPAA 182 AR EEA IR ++ +LL+FVGI +FA+RTARHLSYGDQRRLEIARALAT+PQLLALDEPAA Sbjct: 124 ARREEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAA 183 Query: 183 GMNATEKLALRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQK 242 GMNATEKL LRELLVKI+AEGKTILLIEHDVKLMMGLC+RITVLDYGKPIAEGVPADVQK Sbjct: 184 GMNATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPADVQK 243 Query: 243 NPAVIEAYLGAGH 255 +PAVIEAYLG H Sbjct: 244 DPAVIEAYLGGSH 256 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 217 bits (553), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 107/258 (41%), Positives = 166/258 (64%), Gaps = 4/258 (1%) Query: 1 MSQT----LLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQ 56 MSQT L+++ V+ R GL A++ + G+I LIGPNGAGKTT +NVI+G + Sbjct: 1 MSQTNTTAALELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMK 60 Query: 57 PDTGSFELAGQPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGA 116 P +G +L G + AP ++++ G+ R+FQ +F TV EN++ H++ + V A Sbjct: 61 PTSGRVKLFGHDITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALHLKGQCGVLQA 120 Query: 117 VFRHKAARDEEAAIRAKSQQLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATEPQLLA 176 + R + R EEA +R ++ LL F+G+ A A +LSYG+QR L + ALA +P++L Sbjct: 121 LLRTQKFRREEADLRTQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVLL 180 Query: 177 LDEPAAGMNATEKLALRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGV 236 LDEPAAG+N +E A +E++ +I G T+LL+EHD+ ++M + + I VL+YG+ IA G Sbjct: 181 LDEPAAGLNPSETEAFKEMVRRIGQSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIATGS 240 Query: 237 PADVQKNPAVIEAYLGAG 254 P+++Q +P VI AYLG+G Sbjct: 241 PSEIQNDPEVIRAYLGSG 258 >gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino acid transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 274 Score = 176 bits (445), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 101/252 (40%), Positives = 156/252 (61%), Gaps = 4/252 (1%) Query: 5 LLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGSFEL 64 L+ + D++ RFGGL AL+ + + I G++ GL+GPNG+GKTTFFNV+TGLY+ +GS Sbjct: 20 LVGVTDLTMRFGGLTALDQLNMQINEGEVLGLLGPNGSGKTTFFNVLTGLYKATSGSIIY 79 Query: 65 AGQPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKAAR 124 GQ P E+ ++G+ARTFQ RL +TV +N+++G + +F +F+ KA R Sbjct: 80 KGQEVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMNHGLFFNLFQRKAFR 139 Query: 125 DEEAAIRAKSQQLLDFVGIGQFAK--RTARHLSYGDQRRLEIARALATEPQLLALDEPAA 182 E A K + LL+ A+ + D+RR+E+ RAL ++P+LL LDEP+A Sbjct: 140 AEYDAYVGKVEALLNIFSPPLVARMFEPVGTFTMIDRRRIEVCRALLSQPRLLLLDEPSA 199 Query: 183 GMNATEKLALRELLVKIQA--EGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADV 240 GM E AL + +++++ E TI+LIEH++ ++ + +R V +YGK IAEG A++ Sbjct: 200 GMTHDETEALMDDILQVRGKLENLTIVLIEHEMNVIERITDRCIVFNYGKKIAEGTYAEI 259 Query: 241 QKNPAVIEAYLG 252 +P V AYLG Sbjct: 260 TADPNVQTAYLG 271 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 170 bits (430), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 95/252 (37%), Positives = 150/252 (59%), Gaps = 6/252 (2%) Query: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 MSQ L++R+V KRFG + + G + + +GQ LIGPNGAGK+T FN+I+G + +G Sbjct: 1 MSQLALELREVRKRFGNAEIICGASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSG 60 Query: 61 SFELAGQPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRH 120 L G + P+++ + G++R+FQ +F ++V EN+ C V G + Sbjct: 61 DILLNGSSIAGQKPYQINRRGLSRSFQITNIFHRLSVFENLR--CAVLWS---LGYRYSF 115 Query: 121 KAARDEEAAIRAKSQQLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATEPQLLALDEP 180 + + +++Q+++ +G+ + A LSY +QR LEI +A Q+L LDEP Sbjct: 116 WQRLNGLQDVNQRAEQVMEEIGLHKRRNVEADLLSYAEQRALEIGITIAGGAQVLLLDEP 175 Query: 181 AAGMNATEKLALRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADV 240 AGM+ +E A EL+ KI A GKT+L++EHD+ ++ GL +RI VL YG+ IA P ++ Sbjct: 176 TAGMSRSESDAAVELIRKISA-GKTLLMVEHDMDVVFGLADRIAVLVYGEIIACDTPDNI 234 Query: 241 QKNPAVIEAYLG 252 + NP V +AYLG Sbjct: 235 RNNPLVQQAYLG 246 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 138 bits (347), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 128/241 (53%), Gaps = 15/241 (6%) Query: 6 LKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGSFELA 65 ++++++ K+FG ALN V + G++ L+GP+G GKTT +I GL QPD G L Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 66 GQPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKAARD 125 G+ SA H V + + FQ+ LF MTV EN+ G VR A R Sbjct: 63 GE--DASARH-VRERQVGFVFQHYALFKHMTVFENIAFGLRVRP-----------AATRP 108 Query: 126 EEAAIRAKSQQLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATEPQLLALDEPAAGMN 185 E+ I+ K +LL+ V + A R LS G ++R+ +ARALA EP++L LDEP ++ Sbjct: 109 SESQIKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALD 168 Query: 186 ATEKLALRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKNP 244 A + LR L ++ + T + + HD + + + ++I +++ G G P DV NP Sbjct: 169 AKVRKELRRWLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNP 228 Query: 245 A 245 A Sbjct: 229 A 229 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 593,685 Number of extensions: 25439 Number of successful extensions: 252 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 184 Number of HSP's successfully gapped: 64 Length of query: 255 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 174 Effective length of database: 921,564 Effective search space: 160352136 Effective search space used: 160352136 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)