BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0985.p
         (228 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979886|ref|YP_001354241.1| DNA repair protein RadC [Janthi...   259   1e-70
gi|152983064|ref|YP_001352677.1| DNA repair protein RadC [Janthi...   113   8e-27

>gi|152979886|ref|YP_001354241.1| DNA repair protein RadC
           [Janthinobacterium sp. Marseille]
          Length = 224

 Score =  259 bits (661), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 125/223 (56%), Positives = 166/223 (74%)

Query: 6   TLTHWPKDQRPRERLLQFGPAALSDAELLAIFLRVGIPGKNVMEVSHSLLKRFGSLEMLF 65
            ++ WP+  RPRERL++ G A L+DAELLAIFLR+G+ GK+ ++++  +L  FGSL  LF
Sbjct: 2   AISDWPEQDRPRERLIKHGAAILTDAELLAIFLRLGVAGKSAVDLARDMLNHFGSLHALF 61

Query: 66  DAAHNKTDLGDGLGPAKCSQLRAALELSRRVIHEQLKTHSVLNSTRAVGDYLKLLFKGRE 125
            A+ +     +GLGPAK +QL+A LEL+RR + E+L+    LNS +AV  YL+LL  G+ 
Sbjct: 62  SASLDDFSQLNGLGPAKYAQLQAVLELTRRSLSEELQIGISLNSPQAVKKYLQLLLGGKP 121

Query: 126 HECFVALFMNVRNQLIGTEELFRGTLNHSAVYPREVVKAALRHNAASVILAHNHPSGDPE 185
           +E F  LF++V+N+LI  EELFRGTL H++VYPRE+VK AL HNAASVILAHNHPSG  E
Sbjct: 122 YEAFAVLFLDVKNRLIACEELFRGTLTHTSVYPREIVKEALTHNAASVILAHNHPSGSSE 181

Query: 186 PSDQDLDMTEALEDALDLVDVELLDHFVVAGTRLYSFADHGKL 228
           PS  D  +T+AL+ AL L+DV +LDHFVV G  +YSFA+HG L
Sbjct: 182 PSAADHSLTQALKQALALIDVRVLDHFVVGGKNVYSFAEHGHL 224


>gi|152983064|ref|YP_001352677.1| DNA repair protein RadC
           [Janthinobacterium sp. Marseille]
          Length = 190

 Score =  113 bits (283), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 81/122 (66%)

Query: 107 LNSTRAVGDYLKLLFKGREHECFVALFMNVRNQLIGTEELFRGTLNHSAVYPREVVKAAL 166
           L S + V DYL+L     + E F  +FM+ +++++  E LF GT++ ++VYPR +V+ A+
Sbjct: 68  LTSPKDVKDYLRLQLLNEKREVFAVVFMDTQHRVLAYEPLFFGTIHQTSVYPRAIVQRAM 127

Query: 167 RHNAASVILAHNHPSGDPEPSDQDLDMTEALEDALDLVDVELLDHFVVAGTRLYSFADHG 226
             NAAS+ILAHNHPSG   PS+ D  +T  L+  L+ +DV +LDHF++     +SFA+HG
Sbjct: 128 SLNAASMILAHNHPSGSTHPSEADKQLTNRLKSLLESIDVRVLDHFIIGEEGTFSFAEHG 187

Query: 227 KL 228
            L
Sbjct: 188 LL 189


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 464,560
Number of extensions: 16988
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 2
Length of query: 228
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 148
Effective length of database: 925,261
Effective search space: 136938628
Effective search space used: 136938628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)