BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0981.p
         (358 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980995|ref|YP_001354258.1| mechanosensitive ion channel pr...   351   4e-98
gi|152982965|ref|YP_001354119.1| mechanosensitive ion channel pr...    78   9e-16
gi|152982694|ref|YP_001355270.1| mechanosensitive ion channel pr...    72   5e-14

>gi|152980995|ref|YP_001354258.1| mechanosensitive ion channel
           protein [Janthinobacterium sp. Marseille]
          Length = 454

 Score =  351 bits (900), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 193/348 (55%), Positives = 260/348 (74%), Gaps = 8/348 (2%)

Query: 3   PLVIAQVAMRFVFYVLRGIFVKDATVGALLHLSEKLIALLVWLCVVLWITGLWPDFVDYL 62
           PLV +   +R  FYV+R +F +     A + L E+  A LVW+ V L ITG  PD +++L
Sbjct: 102 PLVASFALIRLAFYVMRRVFARGGKTSAFVLLFERSFASLVWIVVALHITGFLPDIIEFL 161

Query: 63  DSTTLPLARHKVSLLTMLQGAASVLVTLIIALWIGTVLENRLMKFSGMHSSLRTVVARMM 122
           D T +PL +HKVS++TMLQ   SV VTLIIALW   ++E RLM+  GMHSS+R V++RM 
Sbjct: 162 DDTFVPLGKHKVSMMTMLQAVVSVGVTLIIALWASAMIEERLMRLDGMHSSMRAVLSRMS 221

Query: 123 RALLILIAFLVSLSLVGIDLTVLSVFGGALGVGIGLGLQKIASSYVSGFVILLERSMVIG 182
           RA+LILIA LVSLS+VGIDLTVLSVFGGALGVG+GLGLQKIASSYVSGF+ILLERSM IG
Sbjct: 222 RAVLILIALLVSLSMVGIDLTVLSVFGGALGVGLGLGLQKIASSYVSGFIILLERSMTIG 281

Query: 183 DMVAVDKFFGKVTQINTRYTILEGLDGIETVLPNELFVSNPVQNYSLTHRIVRLSTQLTI 242
           D V +DKF G+V QINTRYT+L G DG +T+LPN+LFVSN VQN SL+  +V+L+T++++
Sbjct: 282 DTVTMDKFTGRVAQINTRYTVLRGGDGSDTILPNDLFVSNAVQNLSLSDTVVQLTTRISV 341

Query: 243 LYQDDVETVLSIMEQAALGVQRVSQ--QTAPQALLIKIGADGLELELGFWITDPENGRLN 300
            Y+ D++  L ++E+AAL V++V +     P A ++  GADG++L+LGFW+ D + GR  
Sbjct: 342 DYRTDIDLALRLLEEAALSVEKVRKGPDRVPGATMMAFGADGIDLQLGFWVNDLD-GRGT 400

Query: 301 VLSEVNRAIWAAFKRHGVQVAHPKRDIRIMDER----SFRQSTAQENP 344
           VLS+VNRAIW +F+ + + V  P+R+IR++DE+      R +TA+ NP
Sbjct: 401 VLSDVNRAIWRSFQANEINVPFPQREIRLIDEQYGPIKERLNTAK-NP 447


>gi|152982965|ref|YP_001354119.1| mechanosensitive ion channel
           protein [Janthinobacterium sp. Marseille]
          Length = 284

 Score = 77.8 bits (190), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 125/248 (50%), Gaps = 9/248 (3%)

Query: 88  VTLIIALWIGTVLENRLMKFSG--MHSSLRTVVARMMRALLI-LIAFLVSLSLVGIDLTV 144
           + +++  W+  VL  R  ++    + + ++  + RM+    + LI   V+L +VG+D   
Sbjct: 35  IVVLLIFWVLAVLVRRAARYGSKFIKNPMKASLIRMLSYYTVWLIGIFVALDVVGVDARS 94

Query: 145 LSVFGGALGVGIGLGLQKIASSYVSGFVILLERSMVIGDMVAVDKFFGKVTQINTRYTIL 204
           L+   G  GV +G  L+ + S+ VSG  IL+ ++  IGD + V +  G V +I  R T +
Sbjct: 95  LATGLGLGGVALGFALKDVLSNLVSGLFILIAQTFEIGDQIVVGETEGTVERIQIRATHI 154

Query: 205 EGLDGIETVLPN-ELFVSNPVQNYSLTHRIVRLSTQLTILYQDDVETVLSIMEQAALGVQ 263
              DG   ++PN E+F+S    N +   R  R S  + + Y  D+E  +S++ +    V 
Sbjct: 155 RTYDGRLVLVPNGEVFMSRVTNNTASELR--RTSVFVYLEYGQDIELAMSLILKTVKAVP 212

Query: 264 RVSQQTAPQALLIKIGADGLELELGFWITDPENGRLNVL-SEVNRAIWAAFKRHGVQVAH 322
            V+   A    L  +  +   +E  FW TD    +L ++ S+V  AI  A +  G+++ +
Sbjct: 213 GVATNPAASIRLRDLTTEHFYIESRFW-TDSRRTKLRLISSDVRLAIIKALENAGIELPN 271

Query: 323 P-KRDIRI 329
           P +RD+ I
Sbjct: 272 PNQRDVSI 279


>gi|152982694|ref|YP_001355270.1| mechanosensitive ion channel
           protein [Janthinobacterium sp. Marseille]
          Length = 374

 Score = 72.0 bits (175), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 4/219 (1%)

Query: 116 TVVARMMRALLILIAFLVSLSLVGIDLTVLSVFGGALGVGIGLGLQKIASSYVSGFVILL 175
           T +  ++R  ++L   L  L+ +G+++T      G  G+ I   LQ I S   +   I L
Sbjct: 138 TTMVFLLRIAVMLTVLLAVLANLGVNITAFVASLGIGGIAIAFALQAILSDLFASLSIGL 197

Query: 176 ERSMVIGDMVAVDKFFGKVTQINTRYTILEGLDGIETVLPNELFVSNPVQNYS-LTHRIV 234
           ++   +GD + VD   G V  +  R T L  L G + V  N   + +P++NY  ++ R  
Sbjct: 198 DKPFEVGDFIVVDDLLGTVEYVGIRTTRLRSLSGEQLVRSNTELLKSPIRNYKRMSER-- 255

Query: 235 RLSTQLTILYQDDVETVLSIMEQAALGVQRVSQQTAPQALLIKIGADGLELELGFWITDP 294
           R+     I +   V+ +  +       ++        +A  ++IG   LE E+ +++   
Sbjct: 256 RVLFNFGITHDTPVDKIAELSSTVRKIIEDAPSTRYDRAHFVRIGPSSLEFEVVYYLLSR 315

Query: 295 ENG-RLNVLSEVNRAIWAAFKRHGVQVAHPKRDIRIMDE 332
           E    ++V   +N  +  A    G+  AHP   + +  E
Sbjct: 316 EYSVYMDVQQHINLELMRACAERGIVFAHPTTTLHVPSE 354


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.140    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 743,540
Number of extensions: 27139
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 4
Length of query: 358
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 274
Effective length of database: 910,473
Effective search space: 249469602
Effective search space used: 249469602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)